Heterogeneity in Disulfide Bond Reduction in IgG1 Antibodies Is Governed by Solvent Accessibility of the Cysteines.

IF 3 Q3 IMMUNOLOGY
Antibodies Pub Date : 2023-12-13 DOI:10.3390/antib12040083
Ramakrishnan Natesan, Andrew B Dykstra, Akash Banerjee, Neeraj J Agrawal
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引用次数: 0

Abstract

We studied unpaired cysteine levels and disulfide bond susceptibility in four different γ-immunoglobulin antibodies using liquid chromatography-mass spectrometry. Our choice of differential alkylating agents ensures that the differential peaks are non-overlapping, thus allowing us to accurately quantify free cysteine levels. For each cysteine residue, we observed no more than 5% to be unpaired, and the free cysteine levels across antibodies were slightly higher in those containing lambda light chains. Interchain and hinge residues were highly susceptible to reducing stresses and showed a 100-1000-fold higher rate of reduction compared to intrachain cysteines. Estimations of the solvent-accessible surface for individual cysteines in IgG1, using an implicit all-atom molecular dynamics simulation, show that interchain and hinge cysteines have >1000-fold higher solvent accessibility compared to intrachain cysteines. Further analyses show that solvent accessibility and the rate of reduction are linearly correlated. Our work clearly establishes the fact that a cysteine's accessibility to the surrounding solvent is one of the primary determinants of its disulfide bond stability.

半胱氨酸的溶剂可及性决定了 IgG1 抗体中二硫键还原的异质性。
我们利用液相色谱-质谱法研究了四种不同的γ-免疫球蛋白抗体中的非配对半胱氨酸水平和二硫键敏感性。我们选择的差分烷化剂可确保差分峰不重叠,从而使我们能够准确量化游离半胱氨酸水平。在每个半胱氨酸残基中,我们观察到未配对的半胱氨酸残基不超过 5%,在含有λ轻链的抗体中,游离半胱氨酸水平略高。链间和铰链残基极易受到还原压力的影响,与链内半胱氨酸相比,还原率高达 100-1000 倍。利用隐式全原子分子动力学模拟对 IgG1 中单个半胱氨酸的溶剂可及表面进行的估计显示,链间和铰链半胱氨酸的溶剂可及表面比链内半胱氨酸高出 1000 倍以上。进一步的分析表明,溶剂可及性与还原率呈线性相关。我们的研究清楚地证明,半胱氨酸对周围溶剂的可及性是决定其二硫键稳定性的主要因素之一。
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来源期刊
Antibodies
Antibodies IMMUNOLOGY-
CiteScore
7.10
自引率
6.40%
发文量
68
审稿时长
11 weeks
期刊介绍: Antibodies (ISSN 2073-4468), an international, peer-reviewed open access journal which provides an advanced forum for studies related to antibodies and antigens. It publishes reviews, research articles, communications and short notes. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers. Full experimental and/or methodical details must be provided. Electronic files or software regarding the full details of the calculation and experimental procedure - if unable to be published in a normal way - can be deposited as supplementary material. This journal covers all topics related to antibodies and antigens, topics of interest include (but are not limited to): antibody-producing cells (including B cells), antibody structure and function, antibody-antigen interactions, Fc receptors, antibody manufacturing antibody engineering, antibody therapy, immunoassays, antibody diagnosis, tissue antigens, exogenous antigens, endogenous antigens, autoantigens, monoclonal antibodies, natural antibodies, humoral immune responses, immunoregulatory molecules.
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