Network pharmacology and molecular docking to study the potential molecular mechanism of Qi Fu Yin for diabetic encephalopathy.

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Xiaodi Guo, Feiyan Wang, Meiling Zheng, Liang Li, Long Li, Jin Wang, Shan Miao, Shanbo Ma, Xiaopeng Shi
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引用次数: 0

Abstract

Diabetic encephalopathy is a chronic complication of diabetes that lacks an optimized treatment strategy. The present study sought to elucidate the potential molecular mechanism of Qi Fu Yin in improving diabetic encephalopathy through network pharmacology. The active components and target information of Qi Fu Yin were obtained from the TCMSP and Swiss target databases, while the target information of diabetic encephalopathy was sourced from Gene cards, OMIM, and Pharm Gkb databases. Enrichment analyses of KEGG and GO were conducted utilizing drug-disease common targets, while protein-protein interactions were predicted through the utilization of the STRING database platform. Subsequently, molecular docking was executed via Auto Dock Vina to authenticate the interaction between core components and core targets. The findings revealed that Qi Fu Yin exhibited 178 common targets with diabetic encephalopathy, and the enrichment analyses demonstrated that these targets were associated with lipid and atherosclerosis, AGE-RAGE signaling pathways, and other related pathways. The findings of the molecular docking indicated a favorable binding affinity between the active components of drug and the core targets, with EGF and quercetin exhibiting the most notable docking score. Additionally, the molecular dynamics simulation corroborated this high affinity. These results suggested that the active ingredients of Qi Fu Yin, including quercetin and kaempferol, may modulated the expression of genes such as IL10, TNF, EGF, and MMP2, thereby activating the AGE-RAGE signaling pathways and potentially serving as a therapeutic intervention for diabetic encephalopathy.Communicated by Ramaswamy H. Sarma.

网络药理学与分子对接,研究气附饮治疗糖尿病性脑病的潜在分子机制。
糖尿病性脑病是糖尿病的慢性并发症,缺乏优化的治疗策略。本研究试图通过网络药理学的方法,阐明气附饮改善糖尿病性脑病的潜在分子机制。气辅饮的有效成分和靶点信息来源于TCMSP和Swiss靶点数据库,糖尿病性脑病的靶点信息来源于Gene cards、OMIM和Pharm Gkb数据库。利用药物-疾病共同靶点对KEGG和GO进行富集分析,利用STRING数据库平台预测蛋白-蛋白相互作用。随后,通过Auto Dock Vina进行分子对接,验证核心组分与核心靶点之间的相互作用。结果显示,气附饮在糖尿病性脑病中有178个共同靶点,富集分析表明这些靶点与脂质和动脉粥样硬化、AGE-RAGE信号通路等相关通路有关。分子对接结果表明,药物活性成分与核心靶点具有良好的结合亲和力,其中EGF和槲皮素的对接得分最高。此外,分子动力学模拟证实了这种高亲和力。这些结果表明,气补饮的有效成分,包括槲皮素和山奈酚,可能调节il - 10、TNF、EGF和MMP2等基因的表达,从而激活AGE-RAGE信号通路,可能作为糖尿病脑病的治疗干预措施。由Ramaswamy H. Sarma传达。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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