Demonstration of Taxonomic Name Data Services through ChecklistBank

Olaf Bánki, Markus Döring, Thomas Jeppesen, Donald Hobern
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Abstract

ChecklistBank is a publishing platform and open data repository focused on taxonomic and nomenclatural datasets. It was launched at the end of 2020, and is a joint development by Catalogue of Life (COL) and the Global Biodiversity Information Facility (GBIF). Close to 50K datasets, mostly originating from published literature mediated through Plazi's TreatmentBank, Pensoft Publishers and the European Journal of Taxonomy, are openly accessible through ChecklistBank. Data sets also include sources with (Molecular) Operational Taxonomic Units, such as from UNITE / PlutoF, National Center for Biotechnology Information Taxonomy / European Nuclotide Archive, and the International Barcode of Life / BoLD. Next to various taxonomic datasets (also from regional and national levels, e.g., shared through GBIF) and nomenclatural datasets (e.g., Zoobank, International Plant Names Index), ChecklistBank also links out to the various original initiatives websites (e.g., World Register of Marine Species, Integrated Taxonomic Information System, COL China, Species Files). ChecklistBank also holds all the tooling that is needed to assemble the COL Checklist, the authoritative global species list of all described organisms. The COL Checklist 2023 (Bánki et al. 2023), containing more than 2.1 million accepted species, is assembled from 164 global taxonomic data sources mediated through ChecklistBank. The COL Checklist contains name usage identifiers, and each checklist version and its underpinning data sources are issued with digital object identifiers. After the launching of ChecklistBank, the EU funded Biodiversity Community Integrated Knowledge Library (BiCIKL) project contributed to additional improvements to ChecklistBank. These added functionalities include, amongst others, a name usage search, name match, and a taxonomic data comparison. The tooling used to assemble the COL Checklist has been generalised through a ChecklistBank 'project functionality' supporting the assembly of a species list. During the demonstration, several of the functionalities, developed in the context of the EU BiCIKL project, will be highlighted.
通过ChecklistBank示范分类名称数据服务
ChecklistBank是一个专注于分类和命名数据集的发布平台和开放数据存储库。它于2020年底启动,是由生命目录(COL)和全球生物多样性信息设施(GBIF)联合开发的。通过ChecklistBank可以公开访问近5万个数据集,其中大部分来自Plazi的TreatmentBank、Pensoft Publishers和European Journal of Taxonomy介导的已发表文献。数据集还包括(分子)操作分类单位的来源,例如来自UNITE / PlutoF,国家生物技术信息分类中心/欧洲核苷酸档案,以及国际生命条形码/ BoLD。除了各种分类数据集(也来自区域和国家层面,例如,通过GBIF共享)和命名数据集(例如,Zoobank,国际植物名称索引)之外,ChecklistBank还链接到各种原始倡议网站(例如,世界海洋物种登记,综合分类信息系统,COL中国,物种档案)。ChecklistBank还拥有组装COL清单所需的所有工具,该清单是所有已描述生物的权威全球物种清单。COL清单2023 (Bánki et al. 2023)包含210多万个已接受的物种,由ChecklistBank介导的164个全球分类学数据源汇编而成。COL检查表包含名称使用标识符,每个检查表版本及其基础数据源都带有数字对象标识符。在ChecklistBank启动后,欧盟资助的生物多样性社区综合知识库(BiCIKL)项目对ChecklistBank进行了进一步改进。这些新增的功能包括名称使用情况搜索、名称匹配和分类数据比较。用于组装COL清单的工具已经通过ChecklistBank的“项目功能”进行了推广,该功能支持物种清单的组装。在演示过程中,将重点介绍在欧盟BiCIKL项目背景下开发的几个功能。
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