Automated tree ring detection of common Indiana hardwood species through deep learning: Introducing a new dataset of annotated images

IF 7.7 Q1 AGRICULTURE, MULTIDISCIPLINARY
Fanyou Wu , Yunmei Huang , Bedrich Benes , Charles C. Warner , Rado Gazo
{"title":"Automated tree ring detection of common Indiana hardwood species through deep learning: Introducing a new dataset of annotated images","authors":"Fanyou Wu ,&nbsp;Yunmei Huang ,&nbsp;Bedrich Benes ,&nbsp;Charles C. Warner ,&nbsp;Rado Gazo","doi":"10.1016/j.inpa.2023.10.002","DOIUrl":null,"url":null,"abstract":"<div><div>Tree-ring dating enables gathering necessary knowledge about trees, and it is essential in many areas, including forest management and the timber industry. Tree-ring dating can be conducted on either wood’s clean cross-sections or tree trunks’ rough end cross-sections. However, the measurement process is still time-consuming and frequently requires experts who use special devices, such as stereoscopes. Modern approaches based on image processing using deep learning have been successfully applied in many areas, and they can succeed in recognizing tree rings. While supervised deep learning-based methods often produce excellent results, they also depend on extensive datasets of tediously annotated data. To our knowledge, there are only a few publicly available ring image datasets with annotations. We introduce a new carefully captured dataset of images of hardwood species automatically annotated for tree ring detection. We capture each wood cookie twice, once in the rough form, similar to industrial settings, and then after careful cleaning, that reveals all growth rings. We carefully overlap the images and use them for an automatic ring annotation in the rough data. We then use the Feature Pyramid Network with Resnet encoder that obtains an overall pixel-level area under the curve score of 85.72% and ring level <span><math><msub><mrow><mi>F</mi></mrow><mrow><mn>1</mn></mrow></msub></math></span> score of 0.7348. The data and code are available at <span><span>https://github.com/wufanyou/growth-ring-detection</span><svg><path></path></svg></span>.</div></div>","PeriodicalId":53443,"journal":{"name":"Information Processing in Agriculture","volume":"11 4","pages":"Pages 552-558"},"PeriodicalIF":7.7000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Information Processing in Agriculture","FirstCategoryId":"1091","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2214317323000781","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"AGRICULTURE, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

Tree-ring dating enables gathering necessary knowledge about trees, and it is essential in many areas, including forest management and the timber industry. Tree-ring dating can be conducted on either wood’s clean cross-sections or tree trunks’ rough end cross-sections. However, the measurement process is still time-consuming and frequently requires experts who use special devices, such as stereoscopes. Modern approaches based on image processing using deep learning have been successfully applied in many areas, and they can succeed in recognizing tree rings. While supervised deep learning-based methods often produce excellent results, they also depend on extensive datasets of tediously annotated data. To our knowledge, there are only a few publicly available ring image datasets with annotations. We introduce a new carefully captured dataset of images of hardwood species automatically annotated for tree ring detection. We capture each wood cookie twice, once in the rough form, similar to industrial settings, and then after careful cleaning, that reveals all growth rings. We carefully overlap the images and use them for an automatic ring annotation in the rough data. We then use the Feature Pyramid Network with Resnet encoder that obtains an overall pixel-level area under the curve score of 85.72% and ring level F1 score of 0.7348. The data and code are available at https://github.com/wufanyou/growth-ring-detection.
通过深度学习自动检测印第安纳州常见硬木树种的年轮:引入一个新的带注释的图像数据集
树木年轮测年可以收集有关树木的必要知识,它在许多领域都是必不可少的,包括森林管理和木材工业。树木年轮测年既可以在木材的干净横截面上进行,也可以在树干的粗端横截面上进行。然而,测量过程仍然很耗时,并且经常需要使用特殊设备的专家,例如立体镜。基于深度学习的图像处理的现代方法已经成功地应用于许多领域,它们可以成功地识别树木年轮。虽然基于监督的深度学习方法通常会产生出色的结果,但它们也依赖于大量带有冗长注释的数据集。据我们所知,只有少数公开可用的带有注释的环状图像数据集。我们引入了一个新的精心捕获的硬木物种图像数据集,该数据集自动注释用于树木年轮检测。我们将每个木质饼干捕获两次,一次是粗糙的形式,类似于工业环境,然后经过仔细的清洁,显示所有的生长环。我们仔细地重叠图像,并将它们用于粗糙数据中的自动环形注释。然后,我们使用带有Resnet编码器的特征金字塔网络,得到曲线下的总体像素级面积为85.72%,环级F1得分为0.7348。数据和代码可在https://github.com/wufanyou/growth-ring-detection上获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Information Processing in Agriculture
Information Processing in Agriculture Agricultural and Biological Sciences-Animal Science and Zoology
CiteScore
21.10
自引率
0.00%
发文量
80
期刊介绍: Information Processing in Agriculture (IPA) was established in 2013 and it encourages the development towards a science and technology of information processing in agriculture, through the following aims: • Promote the use of knowledge and methods from the information processing technologies in the agriculture; • Illustrate the experiences and publications of the institutes, universities and government, and also the profitable technologies on agriculture; • Provide opportunities and platform for exchanging knowledge, strategies and experiences among the researchers in information processing worldwide; • Promote and encourage interactions among agriculture Scientists, Meteorologists, Biologists (Pathologists/Entomologists) with IT Professionals and other stakeholders to develop and implement methods, techniques, tools, and issues related to information processing technology in agriculture; • Create and promote expert groups for development of agro-meteorological databases, crop and livestock modelling and applications for development of crop performance based decision support system. Topics of interest include, but are not limited to: • Smart Sensor and Wireless Sensor Network • Remote Sensing • Simulation, Optimization, Modeling and Automatic Control • Decision Support Systems, Intelligent Systems and Artificial Intelligence • Computer Vision and Image Processing • Inspection and Traceability for Food Quality • Precision Agriculture and Intelligent Instrument • The Internet of Things and Cloud Computing • Big Data and Data Mining
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信