{"title":"Enzyme-mimetic Catalyst Architectures: The Role of Second Coordination Sphere in Catalytic Activity","authors":"Bappaditya Roy, Thimmaiah Govindaraju","doi":"10.1246/bcsj.20230224","DOIUrl":null,"url":null,"abstract":"Enzymes with well-defined three-dimensional structure have in-built information for molecular organization in the near vicinity of the active sites – popularly known as enzyme architecture. Over the past few years, molecular assembly has been exploited in creating artificial enzyme or catalyst architectures. Emergent spatiotemporal structure and catalytic activity can be achieved through controlled assembly of suitable molecular building blocks. The programmed molecular assembly governed by the scheme of molecule architectonics can generate enzyme-mimetic catalyst assembly-architecture. Apart from the conventional ligand-metal interaction in the first coordination sphere of a catalyst, second coordination sphere play key role in the catalytic activity of enzymes. This review attempts to unravel the balancing act between molecular architectonics and second coordination sphere in catalyst assembly-architectures development. Judicious design and exploitation of the state-of-the-art biomimetic catalyst architectures derived from small molecules, sugars, nucleic acids, peptides, and proteins are discussed under the above-mentioned framework. Metal-coordinated molecular assembly-architectures of specific catalytic property are considered with respect to the nature of molecular assembly and experimental conditions. The concise and critical discussion provide a holistic view on the enzyme-mimetic architectures and their second coordination sphere through reductionistic approach-based on the molecular architectonics of simple and modular molecular building blocks. This review highlights the contribution of molecular architectonics and second coordination sphere theory in designing state-of-the-art catalyst assembly-architectures as enzyme-mimetics.","PeriodicalId":9511,"journal":{"name":"Bulletin of the Chemical Society of Japan","volume":"2016 1","pages":"0"},"PeriodicalIF":3.3000,"publicationDate":"2023-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bulletin of the Chemical Society of Japan","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1246/bcsj.20230224","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Enzymes with well-defined three-dimensional structure have in-built information for molecular organization in the near vicinity of the active sites – popularly known as enzyme architecture. Over the past few years, molecular assembly has been exploited in creating artificial enzyme or catalyst architectures. Emergent spatiotemporal structure and catalytic activity can be achieved through controlled assembly of suitable molecular building blocks. The programmed molecular assembly governed by the scheme of molecule architectonics can generate enzyme-mimetic catalyst assembly-architecture. Apart from the conventional ligand-metal interaction in the first coordination sphere of a catalyst, second coordination sphere play key role in the catalytic activity of enzymes. This review attempts to unravel the balancing act between molecular architectonics and second coordination sphere in catalyst assembly-architectures development. Judicious design and exploitation of the state-of-the-art biomimetic catalyst architectures derived from small molecules, sugars, nucleic acids, peptides, and proteins are discussed under the above-mentioned framework. Metal-coordinated molecular assembly-architectures of specific catalytic property are considered with respect to the nature of molecular assembly and experimental conditions. The concise and critical discussion provide a holistic view on the enzyme-mimetic architectures and their second coordination sphere through reductionistic approach-based on the molecular architectonics of simple and modular molecular building blocks. This review highlights the contribution of molecular architectonics and second coordination sphere theory in designing state-of-the-art catalyst assembly-architectures as enzyme-mimetics.
期刊介绍:
The Bulletin of the Chemical Society of Japan (BCSJ) is devoted to the publication of scientific research papers in the fields of Theoretical and Physical Chemistry, Analytical and Inorganic Chemistry, Organic and Biological Chemistry, and Applied and Materials Chemistry. BCSJ appears as a monthly journal online and in advance with three kinds of papers (Accounts, Articles, and Short Articles) describing original research. The purpose of BCSJ is to select and publish the most important papers with the broadest significance to the chemistry community in general. The Chemical Society of Japan hopes all visitors will notice the usefulness of our journal and the abundance of topics, and welcomes more submissions from scientists all over the world.