Current status of whole-genome sequences of Korean angiosperms

IF 0.8 Q4 PLANT SCIENCES
Jongsun PARK, Yunho YUN, Hong XI, Woochan KWON, Janghyuk SON
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引用次数: 0

Abstract

Owing to the rapid development of sequencing technologies, more than 1,000 plant genomes have been sequenced and released. Among them, 69 Korean plant taxa (85 genome sequences) contain at least one whole-genome sequence despite the fact that some samples were not collected in Korea. The sequencing-by-synthesis method (next-generation sequencing) and the PacBio (third-generation sequencing) method were the most commonly used in studies appearing in 65 publications. Several scaffolding methods, such as the Hi-C and 10x types, have also been used for pseudo-chromosomal assembly. The most abundant families among the 69 taxa are Rosaceae (10 taxa), Brassicaceae (7 taxa), Fabaceae (7 taxa), and Poaceae (7 taxa). Due to the rapid release of plant genomes, it is necessary to assemble the current understanding of Korean plant species not only to understand their whole genomes as our own plant resources but also to establish new tools for utilizing plant resources efficiently with various analysis pipelines, including AI-based engines.
韩国被子植物全基因组序列研究现状
由于测序技术的快速发展,已有超过1000个植物基因组测序和发布。其中,韩国69个植物类群(85个基因组序列)虽然没有在国内采集,但至少有一个全基因组序列。在65篇发表的研究中,最常用的是合成测序法(下一代测序法)和PacBio(第三代测序法)。几种支架方法,如Hi-C和10x型,也用于假染色体组装。69个分类群中最丰富的科是蔷薇科(10个分类群)、芸苔科(7个分类群)、豆科(7个分类群)和禾本科(7个分类群)。由于植物基因组的快速释放,有必要整合目前对韩国植物物种的了解,不仅要将它们的全基因组理解为我们自己的植物资源,而且要建立新的工具,通过各种分析管道,包括基于ai的引擎,有效地利用植物资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
KOREAN JOURNAL OF PLANT TAXONOMY
KOREAN JOURNAL OF PLANT TAXONOMY Agricultural and Biological Sciences-Plant Science
CiteScore
1.50
自引率
40.00%
发文量
23
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