Plasmepsin II inhibitory potential of phytochemicals isolated from African antimalarial plants: a computational approach.

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Kolade O Faloye, Manish Kumar Tripathi, Emmanuel G Fakola, Awodayo O Adepiti, Stephen A Adesida, Ibukun O Oyeleke, Praise A Adebayo, Adeola E Aregbesola, Samson O Famuyiwa, Olawale F Akinyele
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Abstract

Plamepsin II has been identified as a therapeutic target in the Plasmodium falciparum's life cycle and may lead to a drastic reduction in deaths caused by malaria worldwide. Africa flora is rich in medicinal qualities and possesses both simple and complex bioactive phytochemicals. This study utilized computational approaches like molecular docking, molecular dynamics simulation, quantum chemical calculations and ADMET to evaluate the plasmepsin II inhibitory properties of phytochemicals isolated from African antimalarial plants. Molecular docking was carried out to estimate the binding affinity of 229 phytochemicals whereby ekeberin A, dichamanetin, 10-hydroxyusambaresine, chamuvaritin and diuvaretin were selected. Further, RMSD and RMSF plots from the 100 ns simulation results showed that the screened phytochemicals were stable in the enzyme's binding pocket. The quantum chemical calculation revealed that all the phytochemicals are strong electrophiles, while ekeberin A was identified as the most stable and dichamanetin as the most reactive. Also, ADMET studies established the drug candidacy of the phytochemicals. Thus, these phytochemicals could act as good antimalarial agents after extensive in vitro and in vivo studies.Communicated by Ramaswamy H. Sarma.

从非洲抗疟植物中分离的植物化学物质的Plasmepsin II抑制潜力:计算方法。
Plamepsin II已被确定为恶性疟原虫生命周期中的治疗靶点,并可能导致世界范围内由疟疾引起的死亡人数急剧减少。非洲植物群具有丰富的药用价值,具有简单和复杂的生物活性植物化学物质。本研究利用分子对接、分子动力学模拟、量子化学计算和ADMET等计算方法,对非洲抗疟植物中分离的植物化学物质的plasmepsin II抑制性能进行了评价。对229种植物化学物质进行了分子对接,选取了鸢尾素A、双沙曼花素、10-羟木杉苷、chamuvaritin和diuvaretin,对它们的结合亲和力进行了估计。此外,100 ns模拟结果的RMSD和RMSF图表明,筛选的植物化学物质在酶的结合口袋中是稳定的。量子化学计算结果表明,所有植物化学物质均为强亲电试剂,其中韭素A稳定性最强,双沙曼黄素反应性最强。此外,ADMET研究确定了植物化学物质的候选药物。因此,经过广泛的体外和体内研究,这些植物化学物质可以作为良好的抗疟疾药物。由Ramaswamy H. Sarma传达。
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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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