Sadovsky Michael, Putintseva Yulia, B. Vladislav, Senashova Maria
{"title":"Revealing the Symmetry of Conifer Transcriptomes through Triplet Statistics","authors":"Sadovsky Michael, Putintseva Yulia, B. Vladislav, Senashova Maria","doi":"10.5772/INTECHOPEN.88696","DOIUrl":null,"url":null,"abstract":"The novel powerful technique is used for a study of combinatorial and statistical properties of transcriptome sequences. The main approach stands on the study of distribution of nucleotide triplet frequency dictionaries obtained from the conversion of transcriptome sequences. The distribution is revealed through PCA presentation and elastic map technique. The transcriptomic data of Siberian larch (Larix sibirica Ledeb.) and Siberian pine (Pinus sibirica Du Tour) were studied. The transcriptomes exhibit unusual symmetries. The octahedral structure exhibiting rotational symmetry in transcriptome contig distribution was found for L. sibirica, while mirror symmetry was found for P. sibirica. The octahedron structure seems to be universal for plants.","PeriodicalId":215288,"journal":{"name":"Transcriptome Analysis","volume":"56 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2019-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Transcriptome Analysis","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5772/INTECHOPEN.88696","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
The novel powerful technique is used for a study of combinatorial and statistical properties of transcriptome sequences. The main approach stands on the study of distribution of nucleotide triplet frequency dictionaries obtained from the conversion of transcriptome sequences. The distribution is revealed through PCA presentation and elastic map technique. The transcriptomic data of Siberian larch (Larix sibirica Ledeb.) and Siberian pine (Pinus sibirica Du Tour) were studied. The transcriptomes exhibit unusual symmetries. The octahedral structure exhibiting rotational symmetry in transcriptome contig distribution was found for L. sibirica, while mirror symmetry was found for P. sibirica. The octahedron structure seems to be universal for plants.
新的强大的技术被用于研究转录组序列的组合和统计特性。主要方法是研究转录组序列转换得到的核苷酸三联体频率字典的分布。通过主成分分析和弹性图技术揭示了其分布。研究了西伯利亚落叶松(Larix sibirica Ledeb.)和西伯利亚松(Pinus sibirica Du Tour .)的转录组数据。转录组表现出不同寻常的对称性。在转录组组配分布上,西伯利亚白蚁的八面体结构表现为旋转对称,而西伯利亚白蚁则表现为镜像对称。八面体结构似乎是植物的普遍结构。