Detecting the Behaviour of COVID-19 Based On Parallel Approach of Sequential Rule Mining Algorithm

Nesma Youssef, Hatem Abdulkader, A. Abdelwahab
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Abstract

The COVID-19 (Coronavirus) is a catastrophic disease, as it causes a global health crisis. Due to the nature of COVID-19, it spreads quickly among humans and infects millions of people within a few periods in the world. It is critical to detect the behaviour of COVID-19 and the speed of its mutating rapidly for better improvement of medications and assists patients in preventing the progression of the disease. This paper examines the discovery of additional information and interest patterns in COVID-19 genome sequences. An enhanced non-redundant sequential rule algorithm is mined from frequent closed dynamic bit vector and sequential generator patterns simultaneously. It speedily discovers nucleotide rules and predicts the next one after eliminating un-candidates' sequential patterns early. Almost all genotyping tests are partial, time-consuming, and involve multi-step processes. So, an efficient parallel approach is implemented by utilizing multicore processor architecture to produce the sequential rules in less time required. The experimental results show that; the proposed Parallel Non-Redundant Dynamic closed generator (PNRD-CloGen) algorithm performs well in terms of execution time, computational cost, and scalability. It has better performance, especially for large datasets and low minimum support values, as it takes around half the time as the competing algorithm. So, it helps to monitor the strain progression of COVID-19 sequentially and enhance clinical management.
基于顺序规则挖掘算法并行方法的COVID-19行为检测
COVID-19(冠状病毒)是一种灾难性疾病,因为它会导致全球健康危机。由于COVID-19的性质,它在人与人之间迅速传播,并在世界上几段时间内感染数百万人。检测COVID-19的行为及其快速突变速度对于更好地改进药物治疗并帮助患者预防疾病进展至关重要。本文研究了在COVID-19基因组序列中发现的其他信息和兴趣模式。同时从频繁闭合动态位向量和序列发生器模式中挖掘出一种增强的非冗余序列规则算法。它能迅速发现核苷酸规则,并在早期排除非候选人的序列模式后预测下一个。几乎所有的基因分型测试都是局部的,耗时的,并且涉及多个步骤。因此,利用多核处理器架构在较短的时间内生成顺序规则,实现了一种高效的并行方法。实验结果表明:提出的并行非冗余动态封闭生成器(PNRD-CloGen)算法在执行时间、计算成本和可扩展性方面具有良好的性能。它具有更好的性能,特别是对于大数据集和低最小支持值,因为它花费的时间大约是竞争算法的一半。因此,这有助于对COVID-19病毒株进展进行有序监测,加强临床管理。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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