Megasdm: Modelling Species Ranges in The Past And Future

Benjamin R. Shipley, B. Dilkina, Jenny L. McGuire
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Abstract

As we enter the Anthropocene, unprecedented climatic and landscape changes are leading to global extinctions and the reorganization of many species’ ranges. Understanding how species ranges have changed through time can contextualize long-term interactions between geography and ecology, offer insight into how they may change in the future, and inform conservation of vulnerable species. Species distribution models (SDMs) can be an important method for examining these range shifts, both in the future and through the past, by providing hypotheses about the responses of species’ ranges to certain scenarios. Here, I present several avenues for exploring hypotheses on range shifts using the megaSDM R package. This package facilitates realistic spatiotemporal SDM analyses by incorporating dispersal probabilities, creating time-step maps of range change dynamics, and efficiently handling large datasets and intensive subsampling techniques, while still allowing model-specific tuning. Using megaSDM, with the ongoing expansion of the nine-banded armadillo (Dasypus novemcinctus) as an example, I show how dispersal rate constraints can be incorporated into predictions of range shifts through time, introducing the concept of “invadable suitability”. Comparing dispersal-constrained to unconstrained models, I establish the importance of considering the dispersal ability of a species when projecting its range through time. Finally, I demonstrate the effects of transient range dynamics (e.g., a momentary range contraction in a period of prolonged expansion) on modelled species distributions, showing that these dynamics can be accounted for by incorporating many incremental time steps. These improvements in SDMs allow us to test and refine hypotheses that forecast or hindcast species range shifts. They are small but important steps towards treating conservation as a dynamic, rather than static, field and bringing a paleontological perspective to the preservation of life on Earth.
Megasdm:模拟过去和未来的物种范围
随着我们进入人类世,前所未有的气候和景观变化正在导致全球灭绝和许多物种范围的重组。了解物种范围是如何随着时间的推移而变化的,可以将地理和生态之间的长期相互作用置于背景下,为它们在未来的变化提供洞见,并为脆弱物种的保护提供信息。物种分布模型(SDMs)通过提供关于物种范围对特定情景的响应的假设,可以成为研究这些范围变化的重要方法,无论是在未来还是过去。在这里,我提出了使用megaSDM R包探索范围移位假设的几种方法。该软件包通过整合分散概率,创建距离变化动态的时间步长图,有效处理大型数据集和密集的子采样技术,同时仍然允许模型特定的调整,从而促进了现实的时空SDM分析。以九带犰狳(Dasypus novemcintus)的持续扩张为例,使用megaSDM,我展示了如何将扩散率约束纳入范围随时间变化的预测,并引入了“不可侵犯适用性”的概念。比较受分散约束的模型和无约束的模型,我确立了在预测一个物种的分布范围时考虑其扩散能力的重要性。最后,我展示了瞬态范围动态(例如,在长时间扩张期间的瞬时范围收缩)对模型物种分布的影响,表明这些动态可以通过合并许多增量时间步来解释。sdm的这些改进使我们能够测试和完善预测或预测物种范围变化的假设。这些微小但重要的进展,将保护作为一个动态的领域,而不是静态的领域,并将古生物学的视角引入地球上的生命保护。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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