Join FDA/PhUSE Working Groups to Help Harness the Power of Computational Science

L. Rosario, T. Kropp, Stephen E. Wilson, Charles K. Cooper
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引用次数: 3

Abstract

Consumers are often pleased by the accuracy with which online shopping websites are able to recommend new products they may be interested in. For example, how did the favorite shopping website of your wine-enthusiast neighbor, who recently purchased a highly durable dog crate for her separation anxiety–stricken canine, know that she would also be interested in 2 items not typically bought together: a do-it-yourself wine cork bulletin board kit and canine calming herbal supplements? Amazon.com, Pandora Radio, and Netflix, to name a few, have developed innovative means to weed through and translate the heaps of data generated from a consumer’s search and ‘‘purchase’’ history into precise product recommendations. Advances in information technology that have been extremely successful for consumer information delivery have also provided effective solutions to data-heavy projects in translational science, genomics, and business analytics. These advances have engendered fields and businesses that regulatory stakeholders can leverage against the mountains of data that accompany each medical product application in order to speed review time, reduce and refine clinical trial requirements, pinpoint postmarket safety signals, and facilitate regulatory science efforts, to name a few potential benefits. Increasingly complex informatics and data challenges must first be addressed in order to harness the potential of medical product development data. Aggregation and curation of data collected from various sources, in various forms, are heavy tasks in existing scientific environments. Data standards and associated tools can make the job of transforming data into knowledge a fast, efficient, and highly repeatable process. The first step, increasing the accessibility of data with standards, is only an enabling step. The full benefit of standardized data can only be actualized when combined with systems, tools, and procedures that allow the user to easily find answers to the scientific and regulatory questions that they face. The FDA and Pharmaceutical Users Software Exchange (PhUSE) have teamed up to tackle these challenges using collaboration, crowd sourcing, and innovation, a strategy similar to one used in 2011 by scientists who were unable to solve the crystal structure of a key retroviral protein. These innovative scientists cast a wide net in order to reach a solution by challenging nonscientist gamers to model the protein’s structure using their intuition and a protein folding game. In 3 weeks, gamers were able to accomplish what biochemists had been unable to achieve for more than a decade and provided the field with new insights for the design of antiretroviral drugs. Similar examples are now becoming more prevalent as we try to harness technical and human resources to address complex scientific and health-related issues. Earlier this year, the FDA and PhUSE cast their own wide net to solve common informatics needs and challenges by calling on all interested parties from across the pharmaceutical industry, government, and technology sectors to bring their innovative ideas to the Computational Science Symposium held on March 19 and 20, 2012. The symposium, cohosted by PhUSE and the FDA’s Center for Biologics Evaluation and Research (CBER) and Center for Drug Evaluation and Research (CDER), was designed to create a space where experts could work collaboratively to identify issues, discuss possible solutions, and ultimately devise and execute solutions by participating in any of the 6 working groups. Working groups were created based on the priorities of CBER and CDER and on interests of other stakeholders identified at previous meetings. All working groups have multiple representatives from both the FDA and industry and will hold virtual meetings throughout the year to address the objectives and next steps generated during the symposium. All working groups are
加入FDA/PhUSE工作组,帮助利用计算科学的力量
消费者通常对网上购物网站能够准确地推荐他们可能感兴趣的新产品感到满意。例如,你的葡萄酒爱好者邻居最近为她的分离焦虑的狗买了一个非常耐用的狗箱,她最喜欢的购物网站怎么知道她也会对两件通常不会一起买的东西感兴趣:一个自己做的葡萄酒软木塞公告板套装和狗镇静草药补充剂?亚马逊(Amazon.com)、潘多拉电台(Pandora Radio)和网飞(Netflix)等公司已经开发出了创新的方法,可以从消费者的搜索和“购买”历史中产生的大量数据中进行筛选,并将其转化为精确的产品推荐。信息技术的进步在消费者信息传递方面取得了极大的成功,也为转化科学、基因组学和商业分析中的数据密集型项目提供了有效的解决方案。这些进步使监管利益相关者可以利用每个医疗产品应用程序附带的大量数据来加快审查时间,减少和改进临床试验要求,确定上市后安全信号,并促进监管科学工作,仅举几个潜在的好处。为了利用医疗产品开发数据的潜力,必须首先解决日益复杂的信息学和数据挑战。在现有的科学环境中,汇总和整理从各种来源以各种形式收集的数据是一项繁重的任务。数据标准和相关工具可以使将数据转换为知识的工作成为一个快速、有效和高度可重复的过程。第一步,通过标准增加数据的可访问性,只是一个有利的步骤。标准化数据的全部好处只有在与系统、工具和程序相结合时才能实现,这些系统、工具和程序允许用户轻松找到他们所面临的科学和监管问题的答案。FDA和药品用户软件交换中心(PhUSE)已联手通过协作、众包和创新来应对这些挑战,这一策略与2011年无法解决关键逆转录病毒蛋白晶体结构的科学家所采用的策略类似。为了找到解决方案,这些创新的科学家们广泛撒网,挑战非科学家玩家利用他们的直觉和蛋白质折叠游戏来模拟蛋白质的结构。在3周的时间里,游戏玩家完成了生化学家十多年来无法完成的任务,并为抗逆转录病毒药物的设计提供了新的见解。随着我们努力利用技术和人力资源来解决复杂的科学和健康问题,类似的例子现在变得越来越普遍。今年早些时候,FDA和PhUSE通过呼吁来自制药行业、政府和技术部门的所有相关方将他们的创新想法带到2012年3月19日和20日举行的计算科学研讨会上,为解决共同的信息学需求和挑战撒下了自己的大网。该研讨会由PhUSE和FDA的生物制品评估与研究中心(CBER)和药物评估与研究中心(CDER)共同主办,旨在创造一个专家可以协同工作的空间,以确定问题,讨论可能的解决方案,并最终通过参与6个工作组中的任何一个来设计和执行解决方案。工作组是根据CBER和CDER的优先事项以及在以前会议上确定的其他利益攸关方的利益设立的。所有工作组都有来自FDA和行业的多名代表,并将在全年举行虚拟会议,讨论研讨会期间产生的目标和下一步措施。所有工作小组
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