{"title":"Huge Cohorts, Genomics, and Clinical Data to Personalize Medicine","authors":"J. Denny","doi":"10.1145/3233547.3233608","DOIUrl":null,"url":null,"abstract":"Precision medicine offers the promise of improved diagnosis and for more effective, patient-specific therapies. Typically, such studies have been pursued using research cohorts. At Vanderbilt, we have linked de-identified electronic health records (EHRs), to a DNA repository, called BioVU, which has nearly 250,000 samples. Through BioVU and a NHGRI-funded network using EHRs for discovery, the Electronic Medical Records and Genomics (eMERGE) network, we have used clinical data of genomic basis of disease and drug response using real-world clinical data. The EHR also enables the inverse experiment - starting with a genotype and discovering all the phenotypes with which it is associated - a phenome-wide association study. By looking for clusters of diseases and symptoms through phenotype risk scores, we find unrecognized genetic variants associated with common disease. The era of huge international cohorts such as the UK Biobank, Million Veteran Program, and the newly started All of Us Research Program will make millions of individuals available with dense molecular and phenotypic data. All of Us launched May 6, 2018 and will engage one million diverse individuals across the US who will contribute data and also receive results back.","PeriodicalId":131906,"journal":{"name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","volume":"5 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2018-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/3233547.3233608","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Precision medicine offers the promise of improved diagnosis and for more effective, patient-specific therapies. Typically, such studies have been pursued using research cohorts. At Vanderbilt, we have linked de-identified electronic health records (EHRs), to a DNA repository, called BioVU, which has nearly 250,000 samples. Through BioVU and a NHGRI-funded network using EHRs for discovery, the Electronic Medical Records and Genomics (eMERGE) network, we have used clinical data of genomic basis of disease and drug response using real-world clinical data. The EHR also enables the inverse experiment - starting with a genotype and discovering all the phenotypes with which it is associated - a phenome-wide association study. By looking for clusters of diseases and symptoms through phenotype risk scores, we find unrecognized genetic variants associated with common disease. The era of huge international cohorts such as the UK Biobank, Million Veteran Program, and the newly started All of Us Research Program will make millions of individuals available with dense molecular and phenotypic data. All of Us launched May 6, 2018 and will engage one million diverse individuals across the US who will contribute data and also receive results back.
精准医学提供了改善诊断和更有效、针对患者的治疗的希望。通常,这类研究是采用研究队列进行的。在范德比尔特大学,我们将去识别电子健康记录(EHRs)与一个名为BioVU的DNA存储库联系起来,该存储库拥有近25万个样本。通过BioVU和nhgri资助的网络,使用电子病历和基因组学(eMERGE)网络进行发现,我们使用了疾病和药物反应的基因组基础的临床数据,使用了真实的临床数据。EHR还支持反向实验——从基因型开始,发现与之相关的所有表型——一种全表型关联研究。通过表型风险评分寻找疾病和症状的集群,我们发现了与常见疾病相关的未被识别的遗传变异。庞大的国际队列的时代,如英国生物银行,百万退伍军人计划,以及新启动的我们所有人研究计划,将使数百万人获得密集的分子和表型数据。All of Us于2018年5月6日启动,将吸引美国各地100万不同的人,他们将提供数据并收到结果。