SoyMetDB: The soybean metabolome database

2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Pub Date : 2010-12-01 DOI:10.1109/BIBM.2010.5706563

T. Joshi, Q. Yao, D. F. Levi, L. Brechenmacher, B. Valliyodan, G. Stacey, H. Nguyen, Dong Xu

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引用次数: 13

Abstract

SoyMetDB is a metabolomic database for soybean, developed to target the growing needs of the soybean community. The goal is to provide a one-stop web resource for integrating, mining and visualizing soybean metabolomic data, including identification and expression of various metabolites across different experiments and time courses. It incorporates GC-MS and LC-MS based metabolite-profiling data dynamically linked to metabolite information from other public metabolomic databases, including HMDB and Knapsack. SoyMetDB includes Arabidopsis metabolomic data for cross-species comparisons and can retrieve information including the expression patterns of various experiments for complete or partial metabolite name queries. It also incorporates a pathway viewer tool integrating the data from various experimental conditions and presenting them on the pathways to highlight the expressed metabolite, and identifies the most highly represented pathways for multiple metabolite queries. SoyMetDB can be accessed at http://soymetdb.org.

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SoyMetDB:大豆代谢组数据库

SoyMetDB是一个大豆代谢组学数据库，旨在满足大豆群体日益增长的需求。目标是为整合、挖掘和可视化大豆代谢组学数据提供一站式网络资源，包括不同实验和时间过程中各种代谢物的鉴定和表达。它结合了基于GC-MS和LC-MS的代谢物分析数据，动态链接到其他公共代谢组学数据库(包括HMDB和backpack)的代谢物信息。SoyMetDB包括拟南芥代谢组学数据，用于跨物种比较，并可以检索各种实验的表达模式信息，用于完整或部分代谢物名称查询。它还集成了一个途径查看器工具，集成了来自各种实验条件的数据，并将它们呈现在途径上，以突出显示表达的代谢物，并为多个代谢物查询识别最具代表性的途径。SoyMetDB可以通过http://soymetdb.org访问。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

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