Monte-Carlo Simulation of a Multi-Dimensional Switch-Like Model of Stem Cell Differentiation

M. Andrecut
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引用次数: 6

Abstract

The process controlling the diferentiation of stem, or progenitor, cells into one specific functional direction is called lineage specification. An important characteristic of this process is the multi-lineage priming, which requires the simultaneous expression of lineage-specific genes. Prior to commitment to a certain lineage, it has been observed that these genes exhibit intermediate values of their expression levels. Multi-lineage differentiation has been reported for various progenitor cells, and it has been explained through the bifurcation of a metastable state. During the differentiation process the dynamics of the core regulatory network follows a bifurcation, where the metastable state, corresponding to the progenitor cell, is destabilized and the system is forced to choose between the possible developmental alternatives. While this approach gives a reasonable interpretation of the cell fate decision process, it fails to explain the multi-lineage priming characteristic. Here, we describe a new multi-dimensional switch-like model that captures both the process of cell fate decision and the phenomenon of multi-lineage priming. We show that in the symmetrical interaction case, the system exhibits a new type of degenerate bifurcation, characterized by a critical hyperplane, containing an infinite number of critical steady states. This critical hyperplane may be interpreted as the support for the multi-lineage priming states of the progenitor. Also, the cell fate decision (the multi-stability and switching behavior) can be explained by a symmetry breaking in the parameter space of this critical hyperplane. These analytical results are confirmed by Monte-Carlo simulations of the corresponding chemical master equations.
干细胞分化多维开关模型的蒙特卡罗模拟
控制干细胞或祖细胞向特定功能方向分化的过程称为谱系规范。这个过程的一个重要特征是多谱系启动,这需要谱系特异性基因的同时表达。在承诺到某个谱系之前,已经观察到这些基因表现出其表达水平的中间值。多种祖细胞的多系分化已被报道,并已通过亚稳态的分叉来解释。在分化过程中,核心调控网络的动力学遵循一个分支,其中亚稳态(对应于祖细胞)被破坏,系统被迫在可能的发育选择中做出选择。虽然这种方法给出了细胞命运决定过程的合理解释,但它无法解释多谱系启动特征。在这里,我们描述了一个新的多维开关模型,该模型捕获了细胞命运决定过程和多谱系启动现象。我们证明了在对称相互作用情况下,系统表现出一种新型的简并分岔,其特征是一个包含无限个临界稳态的临界超平面。这个临界超平面可以解释为支持多谱系启动状态的祖先。此外,细胞命运的决定(多稳定性和切换行为)可以用临界超平面参数空间中的对称性破缺来解释。这些分析结果通过相应的化学主方程的蒙特卡罗模拟得到了证实。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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