An out-of-core implementation of the COLUMBUS massively-parallel multireference configuration interaction program

H. Dachsel, J. Nieplocha, R. Harrison
{"title":"An out-of-core implementation of the COLUMBUS massively-parallel multireference configuration interaction program","authors":"H. Dachsel, J. Nieplocha, R. Harrison","doi":"10.1109/SC.1998.10027","DOIUrl":null,"url":null,"abstract":"In this paper, we describe a novel parallelization approach we developed to solve the largest multireference configuration interaction (MRCI) problem ever attempted. From the mathematical perspective, the program solves the eigenvalue problem for a very large, sparse, symmetric Hamilton matrix. Using an out-of-core approach, shared memory programming model, improved data compression algorithms, and dynamic load balancing we were able to solve a problem six times larger than previously reported. The potential curve for the chromium dimer was calculated with a Hamilton matrix of dimension 1.3 billion (1,295,937,374). This task involved moving 1.5 terabytes of data between main memory and secondary storage per MRCI iteration. Furthermore, by employing Active Messages and user-level striping to combine multiple files on local disks on the IBM SP into a single logically-shared file, the execution time of the program was reduced by a factor of three, as compared to our initial implementation on top of the IBM PIOFS parallel filesystem.","PeriodicalId":113978,"journal":{"name":"Proceedings of the IEEE/ACM SC98 Conference","volume":"15 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"1998-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"8","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the IEEE/ACM SC98 Conference","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/SC.1998.10027","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 8

Abstract

In this paper, we describe a novel parallelization approach we developed to solve the largest multireference configuration interaction (MRCI) problem ever attempted. From the mathematical perspective, the program solves the eigenvalue problem for a very large, sparse, symmetric Hamilton matrix. Using an out-of-core approach, shared memory programming model, improved data compression algorithms, and dynamic load balancing we were able to solve a problem six times larger than previously reported. The potential curve for the chromium dimer was calculated with a Hamilton matrix of dimension 1.3 billion (1,295,937,374). This task involved moving 1.5 terabytes of data between main memory and secondary storage per MRCI iteration. Furthermore, by employing Active Messages and user-level striping to combine multiple files on local disks on the IBM SP into a single logically-shared file, the execution time of the program was reduced by a factor of three, as compared to our initial implementation on top of the IBM PIOFS parallel filesystem.
哥伦布大规模并行多引用配置交互程序的核外实现
在本文中,我们描述了我们开发的一种新的并行化方法,用于解决有史以来尝试过的最大多引用配置交互(MRCI)问题。从数学的角度来看,该程序解决了一个非常大的,稀疏的,对称的汉密尔顿矩阵的特征值问题。通过使用外核方法、共享内存编程模型、改进的数据压缩算法和动态负载平衡,我们能够解决比以前报道的问题大六倍的问题。用13亿维的Hamilton矩阵(1,295,937,374)计算了铬二聚体的电位曲线。该任务涉及在每次MRCI迭代中在主存储器和辅助存储器之间移动1.5 tb的数据。此外,通过使用Active Messages和用户级条带化将IBM SP上本地磁盘上的多个文件合并为单个逻辑共享文件,与我们在IBM PIOFS并行文件系统上的初始实现相比,程序的执行时间减少了三分之一。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信