{"title":"Optimizing bioengineered vascular systems: A genetic algorithm approach","authors":"Sima Mehri, Curtis Larsen, G. Podgorski, N. Flann","doi":"10.1109/CIBCB.2017.8058562","DOIUrl":null,"url":null,"abstract":"Efficient metabolism in bioengineered tissues requires a robust vascular system to provide healthy microenvironments to the cells and stroma. Such networks form spontaneously during embryogenesis from randomly distributed endothelial cells. There is a need to bioengineer endothelial cells so that network formation and operation is optimal for synthetic tissues. This work introduces a computational model that simulates de novo vascular development and assesses the effectiveness of the network in delivering nutrients and extracting waste from tissue. A genetic algorithm was employed to identify parameter values of the vaculogenesis model that lead to the most efficient and robust vascular structures. These parameter values control the behavior of cell-level mechanisms such as chemotaxis and adhesion. These studies demonstrate that genetic algorithms are effective at identifying model parameters that lead to near-optimal networks. This work suggests that computational modeling and optimization approaches may improve the effectiveness of engineered tissues by suggesting target cellular mechanisms for modification.","PeriodicalId":283115,"journal":{"name":"2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","volume":"34 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2017-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/CIBCB.2017.8058562","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
Abstract
Efficient metabolism in bioengineered tissues requires a robust vascular system to provide healthy microenvironments to the cells and stroma. Such networks form spontaneously during embryogenesis from randomly distributed endothelial cells. There is a need to bioengineer endothelial cells so that network formation and operation is optimal for synthetic tissues. This work introduces a computational model that simulates de novo vascular development and assesses the effectiveness of the network in delivering nutrients and extracting waste from tissue. A genetic algorithm was employed to identify parameter values of the vaculogenesis model that lead to the most efficient and robust vascular structures. These parameter values control the behavior of cell-level mechanisms such as chemotaxis and adhesion. These studies demonstrate that genetic algorithms are effective at identifying model parameters that lead to near-optimal networks. This work suggests that computational modeling and optimization approaches may improve the effectiveness of engineered tissues by suggesting target cellular mechanisms for modification.