Abstract B028: Label-free Raman signatures of immune cells: A new tool for artificial intelligence in immunotherapy

Girish Chundayil Madathil, Raveena Nagareddy, A. Ramkumar, M. Krishnan, V. Harish, A. Ashokan, S. Nair, Manzoor Koyakutty
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引用次数: 0

Abstract

In the emerging era of artificial intelligence mediated immune response analysis, post- imunotherapeutic interventions, monitoring of large pool of data related to different types of immune cells is a critical requirement. Several gold standard methodologies such as flow cytometry, cytoTOF, ELISPOT and other immune-imaging techniques are routinely used for quantifying the phenotypic behavior of immune cells. These techniques involve the use of antibodies for specifically labeling each cell types, which makes the procedure expensive and laborious. Here, we are presenting a novel approach for label free detection of various types of immune cells using their inherent vibrational Raman signatures and a method of using the same data for cluster analysis. Raman spectroscopy is a well-established tool that measures the vibrational fingerprints of the analytes. It has been extensively used in biologic research for differentiating cells and tissues based on their Raman spectral features. Since the basic building block molecules of the cells are the same, variations in the spectral features among cells and tissues are minimal. Mathematical tools such as multivariate statistical analysis and machine learning methods are adopted to identify the significant Raman spectral features that cause the variation among groups (DC, macrophage, NK, T-cell, B cell, neutrophils, etc.). In immunology, no studies have been reported so far in understanding and recording the inherent Raman spectral finger prints of all forms of immune cells, both in the naive and active stage. In this study, we have created a spectral database of various immune cells such as T-cells, B cells, NK cells, dendritic cells, macrophages, neutrophils and their signature variations in activated and naive forms. These spectral databases can be used in machine learning algorithms to predict the treatment response in clinical and preclinical settings. Citation Format: Girish Chundayil Madathil, Raveena Nagareddy, Anjana Ramkumar, Manu Krishnan, Vijay Harish, Anusha Ashokan, Shanti Kumar Nair, Manzoor Koyakutty. Label-free Raman signatures of immune cells: A new tool for artificial intelligence in immunotherapy [abstract]. In: Proceedings of the Fourth CRI-CIMT-EATI-AACR International Cancer Immunotherapy Conference: Translating Science into Survival; Sept 30-Oct 3, 2018; New York, NY. Philadelphia (PA): AACR; Cancer Immunol Res 2019;7(2 Suppl):Abstract nr B028.
摘要:免疫细胞的无标签拉曼特征:人工智能在免疫治疗中的新工具
在人工智能介导的免疫反应分析、免疫治疗后干预的新兴时代,监测与不同类型免疫细胞相关的大量数据是一项关键要求。几种金标准方法,如流式细胞术、细胞tof、ELISPOT和其他免疫成像技术,通常用于定量免疫细胞的表型行为。这些技术涉及到使用抗体对每种细胞类型进行特异性标记,这使得该过程既昂贵又费力。在这里,我们提出了一种利用其固有振动拉曼特征对各种类型的免疫细胞进行无标签检测的新方法,以及一种使用相同数据进行聚类分析的方法。拉曼光谱是一种完善的工具,可以测量分析物的振动指纹。利用拉曼光谱特征来区分细胞和组织已广泛应用于生物学研究中。由于细胞的基本组成分子是相同的,细胞和组织之间光谱特征的变化是最小的。采用多元统计分析和机器学习方法等数学工具,识别导致组间(DC、巨噬细胞、NK、t细胞、B细胞、中性粒细胞等)差异的显著拉曼光谱特征。在免疫学方面,迄今为止还没有研究报道了解和记录所有形式的免疫细胞固有的拉曼光谱指纹,无论是在初始阶段还是活跃阶段。在这项研究中,我们创建了各种免疫细胞的光谱数据库,如t细胞、B细胞、NK细胞、树突状细胞、巨噬细胞、中性粒细胞及其激活和初始形式的特征变异。这些谱数据库可用于机器学习算法,以预测临床和临床前设置的治疗反应。引文格式:Girish Chundayil Madathil, Raveena Nagareddy, Anjana Ramkumar, Manu Krishnan, Vijay Harish, Anusha Ashokan, Shanti Kumar Nair, Manzoor Koyakutty。免疫细胞无标记拉曼特征:人工智能在免疫治疗中的新工具[摘要]。第四届CRI-CIMT-EATI-AACR国际癌症免疫治疗会议:将科学转化为生存;2018年9月30日至10月3日;纽约,纽约。费城(PA): AACR;癌症免疫学杂志,2019;7(2增刊):摘要nr B028。
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