Response Surface Method for the Optimization of E. cloacae Strain UPM2021a Growth on Acrylamide as a Nitrogen Source

A. Abubakar, M. Manogaran, H. Yakasai, N. A. Yasid, M. Shukor
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Abstract

Acrylamide is often used in soil stabilization works. It is a neurotoxin and leachate from such stabilization works contaminate soils all around the world. E. cloacae strain UPM2021a which had been previously isolated and demonstrated the ability to degrade acrylamide was further studied for its critical parameters contributing to the optimum growth of acrylamide. The Box-Behnken design was utilized in optimizing the three previously identified significant components (pH, incubation time and acrylamide concentration). Of the three factors, acrylamide and pH were the significant factors. The response surface plot exhibited evidence of interactions. Predicted optimal conditions were determined using the "Numerical Optimisation" toolbox of the Design Expert software. Two optimal conditions were tested. The model predicted a maximum growth of 10.686 (95% C.I., 10.458 to 10.913) which was verified through experimental results with a growth of 11.257 (95% C.I., 11.051 to 11.462) with the actual results being near to the predicted values but was significantly higher than the predicted values. The second numerical optimization gave a solution with a predicted maximum growth of 9.305 log CFU/mL (95% C.I. from 9.011 to 9.614) which was verified through experimental results with a growth of 9.978 log CFU/mL (95% C.I. from 9.830 to 10.126) with the actual results were also significantly higher than the predicted values. This means that other methods which employ more runs such as CCD or a different optimization approach such as Artificial Neural Network may be employed in the future to close the difference between the model predicted and actual experimental values. Despite this, the RSM exercise gave far better growth on acrylamide than OFAT with a higher response of about 2 log CFU/mL unit indicating the utility of RSM over OFAT in the optimization of growth of this bacterium on acrylamide.
响应面法优化丙烯酰胺为氮源的阴沟肠杆菌UPM2021a生长条件
丙烯酰胺常用于土壤稳定工程。这是一种神经毒素,这种稳定工程的渗滤液污染了世界各地的土壤。对此前分离到的具有降解丙烯酰胺能力的阴沟肠杆菌UPM2021a进行了进一步的研究,以确定其影响丙烯酰胺最佳生长的关键参数。Box-Behnken设计用于优化先前确定的三个重要成分(pH、孵卵时间和丙烯酰胺浓度)。三个因素中,丙烯酰胺和pH是最显著的影响因素。反应面图显示了相互作用的证据。使用Design Expert软件的“数值优化”工具箱确定预测的最佳条件。试验了两种最优条件。模型预测的最大生长量为10.686 (95% c.i., 10.458 ~ 10.913),实验结果为11.257 (95% c.i., 11.051 ~ 11.462),实际结果接近预测值,但显著高于预测值。第二次数值优化得到的解预测值最大增长值为9.305 log CFU/mL (95% C.I.从9.011到9.614),通过实验结果验证了该解的增长值为9.978 log CFU/mL (95% C.I.从9.830到10.126),实际结果也显著高于预测值。这意味着将来可能会采用其他运行次数更多的方法(如CCD)或不同的优化方法(如人工神经网络)来缩小模型预测值与实际实验值之间的差异。尽管如此,RSM在丙烯酰胺上的生长效果要比OFAT好得多,其响应率约为2 log CFU/mL单位,这表明RSM在优化该细菌在丙烯酰胺上的生长方面比OFAT更有效。
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