Detection of Breast Cancer by the Identification of Circulating Tumor Cells Using Association Rule Mining

S. Jananee, R. Nedunchelian
{"title":"Detection of Breast Cancer by the Identification of Circulating Tumor Cells Using Association Rule Mining","authors":"S. Jananee, R. Nedunchelian","doi":"10.4018/IJKDB.2016010102","DOIUrl":null,"url":null,"abstract":"Circulating Tumor Cells CTCs are cells that have shed into the vasculate from the primary tumor and circulate into the blood stream. In this proposed work, the major genes causing the breast cancer is identified by the principle of Association Rule. The trained set and training set is made to upload on the data store. By associating each row of a training set to all the rows of the trained data is done and the report is generated. The Baum welch process is called for the estimation of actual probabilities and emission probabilities by calculating its log likelihood factor which gives the high Priority gene values that are responsible for the cause of cancer. Based on this cell category is splitted into three clusters such as carcinoma level, metastasis level and Kaposi sarcoma. On each cluster it finds the highest priority value in it and classifies into high, low and medium values. On extraction of these higher gene values yields the major responsible genes causing breast cancer. Finally, the obtained results are validated through hierarchical clustering.","PeriodicalId":160270,"journal":{"name":"Int. J. Knowl. Discov. Bioinform.","volume":"4 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Int. J. Knowl. Discov. Bioinform.","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.4018/IJKDB.2016010102","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Circulating Tumor Cells CTCs are cells that have shed into the vasculate from the primary tumor and circulate into the blood stream. In this proposed work, the major genes causing the breast cancer is identified by the principle of Association Rule. The trained set and training set is made to upload on the data store. By associating each row of a training set to all the rows of the trained data is done and the report is generated. The Baum welch process is called for the estimation of actual probabilities and emission probabilities by calculating its log likelihood factor which gives the high Priority gene values that are responsible for the cause of cancer. Based on this cell category is splitted into three clusters such as carcinoma level, metastasis level and Kaposi sarcoma. On each cluster it finds the highest priority value in it and classifies into high, low and medium values. On extraction of these higher gene values yields the major responsible genes causing breast cancer. Finally, the obtained results are validated through hierarchical clustering.
基于关联规则挖掘的循环肿瘤细胞识别检测乳腺癌
循环肿瘤细胞CTCs是从原发肿瘤脱落到血管并循环进入血流的细胞。在本研究中,我们采用关联规则原则来确定乳腺癌的主要致病基因。将训练集和训练集上传到数据存储上。通过将训练集的每一行与训练数据的所有行相关联,就可以生成报告。鲍姆韦尔奇过程被称为通过计算其对数似然因子来估计实际概率和排放概率,该似然因子给出了导致癌症的高优先级基因值。基于此,将细胞分类分为癌级、转移级和卡波西肉瘤三大类。在每个集群上,它找到其中最高的优先级值,并将其分为高、低和中值。从这些较高的基因值中提取出导致乳腺癌的主要基因。最后,通过层次聚类对所得结果进行验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信