Using R

Abstract

This chapter discusses how the best way to learn R is to use it. One should start by using it as a simple calculator, and keep on exploring what one gets back by inspecting the size, shape, and content of what one creates. R is available from CRAN, the Comprehensive R Archive Network. A nice interface to R is RStudio, which is a commercial product, but RStudio has a free open source license that allows one to have a very good and handy interface to R for free, including the possibility of writing reports using Rmarkdown, Sweave, or knitr. The chapter then looks at the two main graphics systems used in R: base graphics, which is an integral part of any R distribution, and ggplot2 (gg referring to grammar of graphics). Data from large epidemiological studies are often summarized in the form of frequency data, which record the frequency of all possible combinations of values of the variables in the study.