Olivia Alge, Jonathan Gryak, Yi-Yang Hua, K. Najarian
{"title":"Classifying Osteosarcoma Using Meta-Analysis of Gene Expression","authors":"Olivia Alge, Jonathan Gryak, Yi-Yang Hua, K. Najarian","doi":"10.1109/BIBM.2018.8621119","DOIUrl":null,"url":null,"abstract":"Meta-analysis of gene expression provides the opportunity to compare gene expression across different platforms. In this paper, we use a meta-analysis of RNA-seq data collected by the SJTU team and publicly available microarray data to build a Random Forest classification model. The Random Forest model had average accuracy of 74.1% for cross-validation in the training set and achieved accuracy of 80.0% on the testing set.","PeriodicalId":108667,"journal":{"name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","volume":"64 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2018-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/BIBM.2018.8621119","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
Abstract
Meta-analysis of gene expression provides the opportunity to compare gene expression across different platforms. In this paper, we use a meta-analysis of RNA-seq data collected by the SJTU team and publicly available microarray data to build a Random Forest classification model. The Random Forest model had average accuracy of 74.1% for cross-validation in the training set and achieved accuracy of 80.0% on the testing set.