Finding critical points and reconstruction of electron densities on grids.

A. Otero-de-la-Roza
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引用次数: 6

Abstract

The quantum theory of atoms in molecules (QTAIM), developed by Bader and co-workers, is one of the most popular ways of extracting chemical insight from the results of quantum mechanical calculations. One of the basic tasks in QTAIM is to locate the critical points of the electron density and calculate various quantities (density, Laplacian, etc.) on them since these have been found to correlate with molecular properties of interest. If the electron density is given analytically, this process is relatively straightforward. However, locating the critical points is more challenging if the density is known only on a three-dimensional uniform grid. A density grid is common in periodic solids because it is the natural expression for the electron density in plane-wave calculations. In this article, we explore the reconstruction of the electron density from a grid and its use in critical point localization. The proposed reconstruction method employs polyharmonic spline interpolation combined with a smoothing function based on the promolecular density. The critical point search based on this reconstruction is accurate, trivially parallelizable, works for periodic and non-periodic systems, does not present directional lattice bias when the grid is non-orthogonal, and locates all critical points of the underlying electron density in all tests studied. The proposed method also provides an accurate reconstruction of the electron density over the space spanned by the grid, which may be useful in other contexts besides critical point localization.
网格上电子密度的临界点寻找与重构。
Bader和他的同事开发的分子原子量子理论(QTAIM)是从量子力学计算结果中提取化学见解的最流行的方法之一。QTAIM的基本任务之一是定位电子密度的临界点,并计算其上的各种数量(密度,拉普拉斯量等),因为这些已经被发现与感兴趣的分子性质相关。如果电子密度是解析给出的,这个过程就相对简单了。然而,如果密度仅在三维均匀网格上已知,则定位关键点更具挑战性。密度网格在周期性固体中是常见的,因为它是平面波计算中电子密度的自然表达式。在本文中,我们探讨了从网格中重建电子密度及其在临界点定位中的应用。该方法采用多谐样条插值和基于前分子密度的平滑函数相结合的方法进行重建。基于该重构的临界点搜索精度高,可并行化,适用于周期和非周期系统,当网格非正交时不存在定向晶格偏置,并且在所研究的所有测试中定位底层电子密度的所有临界点。该方法还提供了在网格所跨越的空间上的电子密度的精确重建,这可能在除临界点定位之外的其他情况下有用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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