Convolutional Neural Network for Combined Classification of Fluorescent Biomarkers and Expert Annotations using White Light Images

Gregory Yauney, Keith Angelino, David Edlund, Pratik Shah
{"title":"Convolutional Neural Network for Combined Classification of Fluorescent Biomarkers and Expert Annotations using White Light Images","authors":"Gregory Yauney, Keith Angelino, David Edlund, Pratik Shah","doi":"10.1109/BIBE.2017.00-37","DOIUrl":null,"url":null,"abstract":"Fluorescent biomarkers are important indicators of disease, but imaging them can require specialized and often-expensive devices. Periodontal and dental diseases resulting from microbial plaque biofilms, if diagnosed early with biomarker images and expert knowledge, can be treated to prevent occurrences of serious systemic illnesses. We report two convolutional neural network classifiers trained with dentist annotations of disease signatures and fluorescent porphyrin biomarker images to identify dental plaque in white light images as a per-pixel binary classification task. The classifiers were trained and tested with millions of image patches from two datasets collected from 27 consenting adults using handheld intraoral cameras. The areas under the receiver operating characteristic curves for the test sets were calculated to be 0.7694 and 0.8720. Once trained, the classifiers predict the location of plaque in white light images without requiring specialized biomarker imaging devices or expert intervention. This generalized approach can be useful in other domains where diagnostic biomarker predicting can augment expert knowledge using standard white light images.","PeriodicalId":262603,"journal":{"name":"2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE)","volume":"26 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2017-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"15","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/BIBE.2017.00-37","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 15

Abstract

Fluorescent biomarkers are important indicators of disease, but imaging them can require specialized and often-expensive devices. Periodontal and dental diseases resulting from microbial plaque biofilms, if diagnosed early with biomarker images and expert knowledge, can be treated to prevent occurrences of serious systemic illnesses. We report two convolutional neural network classifiers trained with dentist annotations of disease signatures and fluorescent porphyrin biomarker images to identify dental plaque in white light images as a per-pixel binary classification task. The classifiers were trained and tested with millions of image patches from two datasets collected from 27 consenting adults using handheld intraoral cameras. The areas under the receiver operating characteristic curves for the test sets were calculated to be 0.7694 and 0.8720. Once trained, the classifiers predict the location of plaque in white light images without requiring specialized biomarker imaging devices or expert intervention. This generalized approach can be useful in other domains where diagnostic biomarker predicting can augment expert knowledge using standard white light images.
基于卷积神经网络的荧光生物标记物分类与白光图像专家注释
荧光生物标志物是疾病的重要指标,但对它们进行成像可能需要专门的、往往昂贵的设备。由微生物菌斑生物膜引起的牙周和牙齿疾病,如果通过生物标志物图像和专业知识进行早期诊断,可以治疗,以防止发生严重的全身性疾病。我们报告了两个卷积神经网络分类器,通过牙医对疾病特征的注释和荧光卟啉生物标志物图像进行训练,以识别白光图像中的牙菌斑作为每像素的二值分类任务。使用手持口内相机对分类器进行训练和测试,这些分类器来自27名同意的成年人收集的两个数据集的数百万图像补丁。测试集的受试者工作特征曲线下面积分别为0.7694和0.8720。经过训练后,分类器可以在白光图像中预测斑块的位置,而不需要专门的生物标志物成像设备或专家干预。这种广义的方法可以用于其他领域,其中诊断生物标志物预测可以使用标准白光图像增加专家知识。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信