Molecular dynamics visualization with XML and VRML

Abstract

A new Extensible Markup Language (XML) application, Molecular Dynamics Language (MoDL) has been developed. MoDL provides a simple, but powerful tool for molecular dynamics visualization and has been developed by combining, for the first time, the strengths of XML and the Virtual Reality Modeling Language. The details of MoDL, its implementation and examples of its use are presented in this paper.