Increasing the Scalability of PISM for High Resolution Ice Sheet Models

P. Dickens, T. Morey
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引用次数: 1

Abstract

The issue of global climate change is of great interest to scientists and a critical concern of society at large. One important piece of the climate puzzle is how the dynamics of large-scale ice sheets, such as those in Greenland and Antarctica, will react in response to such climate change. Domain scientists have developed several simulation models to predict and understand the behavior of large-scale ice sheets, but the depth of knowledge gained from such models is largely dependent upon the resolution at which they can be efficiently executed. The problem, however, is that relatively small increases in the resolution of the model result in very large increases in the size of the input and output data sets, and an explosion in the number of grid points that must be considered by the simulation. Thus, increasing the resolution of ice-sheet models, in general, requires the use of supercomputing technologies and the application of tools and techniques developed within the high-performance computing research community. In this paper, we discuss our work in evaluating and increasing the performance of the Parallel Ice Sheet Model (PISM) [6, 25, 38], using a high-resolution model of the Greenland ice sheet, on a state-of-the-art supercomputer. In particular, we found that the computation performed by PISM was highly scalable, but that the I/O demands of the higher-resolution model were a significant drag on overall performance. We then performed a series of experiments to determine the cause of the relatively poor I/O performance and how such performance could be improved. By making simple changes to the PISM source code and one of the I/O libraries used by PISM we were able to provide an 8-fold increase in I/O performance.
提高PISM在高分辨率冰盖模型中的可扩展性
全球气候变化问题是科学家们非常感兴趣的问题,也是整个社会关注的关键问题。气候之谜的一个重要部分是,像格陵兰岛和南极洲这样的大型冰盖的动态将如何对这种气候变化作出反应。领域科学家已经开发了几种模拟模型来预测和理解大尺度冰盖的行为,但是从这些模型中获得的知识深度在很大程度上取决于它们能够有效执行的分辨率。然而,问题在于,模型分辨率的相对较小的增加会导致输入和输出数据集大小的非常大的增加,以及模拟必须考虑的网格点数量的爆炸式增长。因此,一般来说,提高冰盖模型的分辨率需要使用超级计算技术,并应用高性能计算研究界开发的工具和技术。在本文中,我们讨论了在最先进的超级计算机上使用格陵兰冰盖的高分辨率模型来评估和提高平行冰盖模型(PISM)[6,25,38]的性能的工作。特别是,我们发现PISM执行的计算具有很高的可扩展性,但是高分辨率模型的I/O需求对整体性能有很大的拖累。然后,我们执行了一系列实验,以确定I/O性能相对较差的原因,以及如何改进这种性能。通过对PISM源代码和PISM使用的一个I/O库进行简单的更改,我们能够将I/O性能提高8倍。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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