Role of Nucleic Acid and Protein Manipulation Technologies in High-throughput Structural Biology Efforts

D. Aceti, Paul G. Blommel, Y. Endo, B. Fox, R. Frederick, A. Hegeman, W. Jeon, Todd Kimball, Jason M. Lee, Craig S. Newman, F. Peterson, T. Sawasaki, K. Seder, M. Sussman, E. Ulrich, R. Wrobel, S. Thao, D. Vinarov, B. Volkman, Qin Zhao
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引用次数: 11

Abstract

Introduction Overview of Structural Genomics Initiatives World-wide Use of Bioinformatics as a Predictive Tool High-throughput Cloning Strategies Applied to Arabidopsis cDNA Sources DNA Chip Technologies as a Predictive Tool Genes Lacking Introns Restriction Digestion and Ligation Topoisomerase Cloning Transformation Sequence Verification Escherichia coli Expression Systems T7 Promoter Systems Arabinose Operon Promoter System Wheat Germ Cell-free Translation Systems Characterization of Expression, Solubility, and Purity Electrophoresis and Dye Binding ELISA-based Detection S-Tag-Based Detection Protein Tags and Multi-step Purification Procedures Role of Protease Cleavage in Target Preparation Protein Characterization by Mass Spectrometry Integration with Broader Biological Sciences Community Acknowledgments Keywords: affinity tag; Arabidopsis thaliana; bioinformatics; catabolite repression; codon bias; codon usage; Escherichia coli; expression vectors; factor Xa; fusion protein; gene expression; heterologous expression; high-density oligonucleotide arrays; Laboratory Information Management Systems; MALDI-TOF; mass spectrometry; peptide mapping; PreScission; protease cleavage; protein sequence analysis; solubility tag; soluble protein; structure and functional biology; TEV; T7 bacteriophage promoter; T7 RNA polymerase; target selection; thrombin; transcriptome
核酸和蛋白质操作技术在高通量结构生物学工作中的作用
结构基因组学研究综述世界范围内生物信息学作为预测工具的高通量克隆策略应用于拟南芥cDNA源DNA芯片技术作为预测工具缺乏内含子的基因限制性酶切和连接拓扑异构酶克隆转化序列验证大肠杆菌表达系统T7启动子系统阿拉伯糖操纵子启动子系统小麦无生殖细胞翻译系统特性基于表达、溶解度和纯度的电泳和染料结合elisa检测基于s标签的检测蛋白质标签和多步骤纯化程序蛋白酶裂解在靶制备中的作用质谱分析蛋白质特性与更广泛的生物科学界的结合拟南芥;生物信息学;降解物阻遏;密码子偏倚;密码子的使用;大肠杆菌;表达载体;Xa因素;融合蛋白;基因表达;不同的表情;高密度寡核苷酸阵列;实验室信息管理系统;MALDI-TOF;质谱;肽图;PreScission;蛋白酶裂解;蛋白质序列分析;溶解度标签;可溶性蛋白;结构与功能生物学;TEV;T7噬菌体启动子;T7 RNA聚合酶;目标选择;凝血酶;转录组
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