Supervised machine learning-based prediction for dry mouth oral adverse drug reactions

R. Ramírez-Méndez, Xaviera A. López-Cortés
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Abstract

Adverse drug reactions (ADRs) are defined as an unintended and harmful response that occurs with the ingestion of a certain drug. ADRs result in an appreciably harmful or unpleasant reaction that determines the success or failure of a drug. In this way, the generation of effective models for the prediction of ADR during the drug development process is of high relevance for human health. In this work, we present a complete proposal based on supervised machine learning to study dry mouth oral ADRs for the first time. Our approach integrates different drug properties, such as, chemical (fingerprint), biological (target protein, transporters and enzymes) and phenotypic (therapeutic indications and other known adverse reactions), all of them obtained from public databases that are combined on two and three levels. We employ different tree- based classification algorithms (AdaBoost and Random Forest), with the aim of obtaining the best predictors of the oral RAM studied. 14 models were generated, which gave an average AUC of 0.82 and an accuracy of 78%, where the best model with AdaBoost gave and accuracy and AUC of 87% and 0.89, respectively for the prediction of dry mouth oral ADR
基于监督机器学习的口腔干燥药物不良反应预测
药物不良反应(adr)被定义为摄入某种药物时发生的意想不到的有害反应。不良反应会导致明显有害或令人不快的反应,这决定了药物的成败。因此,在药物开发过程中生成有效的ADR预测模型对人类健康具有重要意义。在这项工作中,我们首次提出了一个基于监督机器学习的完整方案来研究口干口腔不良反应。我们的方法整合了不同的药物特性,如化学(指纹),生物学(靶蛋白,转运蛋白和酶)和表型(治疗适应症和其他已知的不良反应),所有这些都是从公共数据库中获得的,这些数据库在两个和三个层面上进行组合。我们采用不同的基于树的分类算法(AdaBoost和Random Forest),目的是获得所研究的口腔RAM的最佳预测因子。共生成14个模型,平均AUC为0.82,准确率为78%,其中AdaBoost模型预测口干性口腔不良反应的准确率和AUC分别为87%和0.89
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