{"title":"Routing Physarum with Electrical Flow/Current","authors":"S. Tsuda, J. Jones, A. Adamatzky, J. W. Mills","doi":"10.4018/jnmc.2011040104","DOIUrl":null,"url":null,"abstract":"Plasmodium stage of Physarum polycephalum behaves as a distributed dynamical pattern formation mechanism who's foraging and migration is influenced by local stimuli from a wide range of attractants and repellents. Complex protoplasmic tube network structures are formed as a result, which serve as efficient `circuits' by which nutrients are distributed to all parts of the organism. We investigate whether this `bottom-up' circuit routing method may be harnessed in a controllable manner as a possible alternative to conventional template-based circuit design. We interfaced the plasmodium of Physarum polycephalum to the planar surface of the spatially represented computing device, (Mills' Extended Analog Computer, or EAC), implemented as a sheet of analog computing material whose behaviour is input and read by a regular 5x5 array of electrodes. We presented a pattern of current distribution to the array and found that we were able to select the directional migration of the plasmodium growth front by exploiting plasmodium electro-taxis towards current sinks. We utilised this directional guidance phenomenon to route the plasmodium across its habitat and were able to guide the migration around obstacles represented by repellent current sources. We replicated these findings in a collective particle model of Physarum polycephalum which suggests further methods to orient, route, confine and release the plasmodium using spatial patterns of current sources and sinks. These findings demonstrate proof of concept in the low-level dynamical routing for biologically implemented circuit design.","PeriodicalId":259233,"journal":{"name":"Int. J. Nanotechnol. Mol. Comput.","volume":"15 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2011-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"20","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Int. J. Nanotechnol. Mol. Comput.","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.4018/jnmc.2011040104","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 20
Abstract
Plasmodium stage of Physarum polycephalum behaves as a distributed dynamical pattern formation mechanism who's foraging and migration is influenced by local stimuli from a wide range of attractants and repellents. Complex protoplasmic tube network structures are formed as a result, which serve as efficient `circuits' by which nutrients are distributed to all parts of the organism. We investigate whether this `bottom-up' circuit routing method may be harnessed in a controllable manner as a possible alternative to conventional template-based circuit design. We interfaced the plasmodium of Physarum polycephalum to the planar surface of the spatially represented computing device, (Mills' Extended Analog Computer, or EAC), implemented as a sheet of analog computing material whose behaviour is input and read by a regular 5x5 array of electrodes. We presented a pattern of current distribution to the array and found that we were able to select the directional migration of the plasmodium growth front by exploiting plasmodium electro-taxis towards current sinks. We utilised this directional guidance phenomenon to route the plasmodium across its habitat and were able to guide the migration around obstacles represented by repellent current sources. We replicated these findings in a collective particle model of Physarum polycephalum which suggests further methods to orient, route, confine and release the plasmodium using spatial patterns of current sources and sinks. These findings demonstrate proof of concept in the low-level dynamical routing for biologically implemented circuit design.
多头绒泡菌的疟原虫期是一种分布式的动态模式形成机制,其觅食和迁徙受多种引诱剂和驱避剂局部刺激的影响。因此形成了复杂的原生质管网结构,它作为有效的“回路”,将营养物质分配到生物体的各个部分。我们研究这种“自下而上”的电路布线方法是否可以以可控的方式利用,作为传统基于模板的电路设计的可能替代方案。我们将多头绒泡菌(Physarum polycephalum)的疟原虫连接到空间表示的计算设备(Mills' Extended Analog Computer,简称EAC)的平面上,该设备被实现为一张模拟计算材料,其行为由一个常规的5x5电极阵列输入和读取。我们提出了电流分布到阵列的模式,并发现我们能够通过利用疟原虫向电流汇的电的士来选择疟原虫生长锋的定向迁移。我们利用这种定向引导现象来引导疟原虫穿越其栖息地,并能够引导其绕过以驱避电流源为代表的障碍物进行迁移。我们在多头绒泡菌的集体粒子模型中重复了这些发现,这为利用电流源和汇的空间模式来定位、路线、限制和释放疟原虫提供了进一步的方法。这些发现证明了生物实现电路设计的低级动态路由的概念。