A Submatrix-Based Method for Approximate Matrix Function Evaluation in the Quantum Chemistry Code CP2K

Michael Lass, Robert Schade, T. Kuhne, Christian Plessl
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引用次数: 6

Abstract

Electronic structure calculations based on density-functional theory (DFT) represent a significant part of today’s HPC workloads and pose high demands on high-performance computing resources. To perform these quantum-mechanical DFT calculations on complex large-scale systems, so-called linear scaling methods instead of conventional cubic scaling methods are required. In this work, we take up the idea of the submatrix method and apply it to the DFT computations in the software package CP2K. For that purpose, we transform the underlying numeric operations on distributed, large, sparse matrices into computations on local, much smaller and nearly dense matrices. This allows us to exploit the full floating-point performance of modern CPUs and to make use of dedicated accelerator hardware, where performance has been limited by memory bandwidth before. We demonstrate both functionality and performance of our implementation and show how it can be accelerated with GPUs and FPGAs.
量子化学代码CP2K中基于子矩阵的近似矩阵函数求值方法
基于密度泛函理论(DFT)的电子结构计算是当今高性能计算工作的重要组成部分,对高性能计算资源提出了很高的要求。为了在复杂的大尺度系统上执行这些量子力学DFT计算,需要所谓的线性标度方法而不是传统的三次标度方法。在这项工作中,我们将子矩阵方法的思想应用到软件包CP2K中的DFT计算中。为此,我们将分布式、大型、稀疏矩阵上的底层数值运算转换为局部、小得多且接近密集的矩阵上的计算。这使我们能够充分利用现代cpu的浮点性能,并利用专用的加速器硬件,在此之前,性能受到内存带宽的限制。我们演示了我们实现的功能和性能,并展示了如何使用gpu和fpga加速它。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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