Detection of the Atherosclerotic PCSK9 gene Inhibitors Through in silico Method to Improve Targeted Therapy

Sabarinathan Sethuramalingam, Revathy Leena Ravi, Janet Rani Rajiah
{"title":"Detection of the Atherosclerotic PCSK9 gene Inhibitors Through in silico Method to Improve Targeted Therapy","authors":"Sabarinathan Sethuramalingam, Revathy Leena Ravi, Janet Rani Rajiah","doi":"10.14421/biomedich.2022.112.119-131","DOIUrl":null,"url":null,"abstract":"The PCSK9 is one of the most important marks for the evolution of therapeutic agents for atherosclerosis because its interaction with low-density lipoprotein receptors causes atherosclerosis. Protein-ligand interactions help us to understand the true mechanism of pharmacological action. This study seeks to identify the most powerful suppression options for PCSK9. Initially, the reported ACE inhibitors were included in pharmacophore modeling using PharmaGist. Next, ZINCPHARMER was used to screen the selected model against a ZINC database to identify putative drug candidates docked to the target protein to understand the interactions. The 10 best pharmacological candidates for PCSK9 with a binding energy of 9.8-8.2 kcal mol-1 were identified by molecular docking and their pharmacokinetic properties and oral bioavailability were evaluated. The (S) severalplant obtained chemicals have been discovered, including anti-hypersensitive drugs such as “Canadine, Hesperetin, and Labetalol”. According to Biochemistry, these compounds formed a stable “protein-ligand” complex. The (S) canadine PCSK9 complex had the lowest RMSD and was the most stable. Future in vitro studies could identify (S) canadin as a promising atherosclerosis inhibitor for the evolution of novel PCSK9 inhibitors.","PeriodicalId":188261,"journal":{"name":"Biology, Medicine, & Natural Product Chemistry","volume":"34 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biology, Medicine, & Natural Product Chemistry","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.14421/biomedich.2022.112.119-131","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

Abstract

The PCSK9 is one of the most important marks for the evolution of therapeutic agents for atherosclerosis because its interaction with low-density lipoprotein receptors causes atherosclerosis. Protein-ligand interactions help us to understand the true mechanism of pharmacological action. This study seeks to identify the most powerful suppression options for PCSK9. Initially, the reported ACE inhibitors were included in pharmacophore modeling using PharmaGist. Next, ZINCPHARMER was used to screen the selected model against a ZINC database to identify putative drug candidates docked to the target protein to understand the interactions. The 10 best pharmacological candidates for PCSK9 with a binding energy of 9.8-8.2 kcal mol-1 were identified by molecular docking and their pharmacokinetic properties and oral bioavailability were evaluated. The (S) severalplant obtained chemicals have been discovered, including anti-hypersensitive drugs such as “Canadine, Hesperetin, and Labetalol”. According to Biochemistry, these compounds formed a stable “protein-ligand” complex. The (S) canadine PCSK9 complex had the lowest RMSD and was the most stable. Future in vitro studies could identify (S) canadin as a promising atherosclerosis inhibitor for the evolution of novel PCSK9 inhibitors.
通过计算机方法检测动脉粥样硬化PCSK9基因抑制剂以改进靶向治疗
PCSK9与低密度脂蛋白受体相互作用导致动脉粥样硬化,是动脉粥样硬化治疗剂进化的重要标志之一。蛋白质与配体的相互作用帮助我们理解药理学作用的真正机制。本研究旨在确定PCSK9最有效的抑制方案。最初,使用PharmaGist将报道的ACE抑制剂纳入药效团模型。接下来,使用ZINCPHARMER对选定的模型与ZINC数据库进行筛选,以确定与靶蛋白对接的推定候选药物,以了解相互作用。通过分子对接筛选出10个结合能为9.8 ~ 8.2 kcal mol-1的PCSK9最佳候选药物,并对其药动学特性和口服生物利用度进行评价。已经发现了几种从植物中获得的化学物质,包括抗过敏药物,如“加拿大嘌呤、橙皮苷和拉贝他洛尔”。根据生物化学,这些化合物形成了稳定的“蛋白质配体”复合物。(S) canadine PCSK9复合物RMSD最低,最稳定。未来的体外研究可以确定(S)加拿大素是一种有前途的动脉粥样硬化抑制剂,用于新型PCSK9抑制剂的进化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信
小红书