G. Chatzikonstantis, D. Rodopoulos, Sofia Nomikou, C. Strydis, C. I. Zeeuw, D. Soudris
{"title":"First impressions from detailed brain model simulations on a Xeon/Xeon-Phi node","authors":"G. Chatzikonstantis, D. Rodopoulos, Sofia Nomikou, C. Strydis, C. I. Zeeuw, D. Soudris","doi":"10.1145/2903150.2903477","DOIUrl":null,"url":null,"abstract":"The development of physiologically plausible neuron models comes with increased complexity, which poses a challenge for many-core computing. In this work, we have chosen an extension of the demanding Hodgkin-Huxley model for the neurons of the Inferior Olivary Nucleus, an area of vital importance for motor skills. The computing fabric of choice is an Intel Xeon-Xeon Phi system, widely-used in modern computing infrastructure. The target application is parallelized with combinations of MPI and OpenMP. The best configurations are scaled up to human InfOli numbers.","PeriodicalId":226569,"journal":{"name":"Proceedings of the ACM International Conference on Computing Frontiers","volume":"140 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2016-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"5","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the ACM International Conference on Computing Frontiers","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/2903150.2903477","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 5
Abstract
The development of physiologically plausible neuron models comes with increased complexity, which poses a challenge for many-core computing. In this work, we have chosen an extension of the demanding Hodgkin-Huxley model for the neurons of the Inferior Olivary Nucleus, an area of vital importance for motor skills. The computing fabric of choice is an Intel Xeon-Xeon Phi system, widely-used in modern computing infrastructure. The target application is parallelized with combinations of MPI and OpenMP. The best configurations are scaled up to human InfOli numbers.