The analysis of FSH beta-subunit gene genotypes in East Anatolian Red, East Anatolian Red×Holstein, and Zavot bulls

Abstract

Abstract This study aimed to investigate the genotypic distribution and population genetic parameters of the single nucleotide polymorphism (SNP) located on exon 3 at the FSHB gene in East Anatolian Red (EAR), East Anatolian Red×Holstein (EAR×H), and Zavot (Z) bulls. A total of 68 cattle including EAR (n=34), EAR×H (n=20), and Z (n=14) bulls were used. Genomic DNA was isolated from blood samples using the phenol/chloroform method. The genotyping of the SNP was carried out by the PCR-RFLP using the PstI restriction enzyme. Deviation from Hardy–Weinberg equilibrium (HWE) was calculated by using the chi-square goodness-of-fit test. Population genetics evaluation was performed for effective allele numbers, the polymorphism information content, theoretical heterozygosity, the fixation index, level of possible variability realization, and the Shannon-Weaver diversity index. In the present study, the AA and the AB genotypes were predominant in EAR and EAR×H bulls, respectively. Zavot breed was found to be monomorphic. There was a deviation from HWE, concerning the total cattle population. The population genetics evaluation showed that the marker was moderately informative for EAR and the crossbreeds, as well as the total population. Consequently, the polymorphism (rs207774587) within exon 3 of the bovine FSHB can be interpreted as a genetic marker with reliable variability for EAR and the crossbreeds, but not in Zavot cattle.