Two QSAR models for predicting the toxicity of chemicals towards Tetrahymena pyriformis based on topological-norm descriptors and spatial-norm descriptors.

IF 2.3 3区 环境科学与生态学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Q Jia, S Wang, M Yu, Q Wang, F Yan
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引用次数: 0

Abstract

Quantitative structure-activity relationship (QSAR) is important for safe, rapid and effective risk assessment of chemicals. In this study, two QSAR models were established with 1230 chemicals to predict toxicity towards Tetrahymena pyriformis using multiple linear regression (MLR) method. The topological(T)-QSAR model was developed by using topological-norm descriptors generated from the topological structure, and the spatial(S)-QSAR model were built with spatial-norm descriptors obtained from the three-dimensional structure of molecules and topological-norm descriptors. The r2training and r2test are 0.8304 and 0.8338 for the T-QSAR model, and 0.8485 and 0.8585 for the S-QSAR model, which means that T-QSAR model and S-QSAR model can be used to predict toxicity quickly and accurately. In addition, we also conducted validation on the developed models. Satisfying validation results and statistical parameters demonstrated that QSAR models based on the topological-norm descriptors and spatial-norm descriptors proposed in this paper could be further utilized to estimate the toxicity of chemicals towards Tetrahymena pyriformis.

基于拓扑范数描述符和空间范数描述符的化学物质对梨形四膜虫毒性预测的两个QSAR模型。
定量构效关系(QSAR)对安全、快速、有效地评价化学品的风险具有重要意义。本研究采用多元线性回归(MLR)方法建立了1230种化学物质对梨形四膜虫(Tetrahymena pyriformis)毒性预测的QSAR模型。利用分子拓扑结构生成的拓扑范数描述符建立拓扑(T)-QSAR模型,利用分子三维结构获得的空间范数描述符和拓扑范数描述符建立空间(S)-QSAR模型。T-QSAR模型的r_2训练值和r_2检验值分别为0.8304和0.8338,S-QSAR模型的r_2训练值和r_2检验值分别为0.8485和0.8585,说明T-QSAR模型和S-QSAR模型可以快速准确地预测毒性。此外,我们还对所开发的模型进行了验证。令人满意的验证结果和统计参数表明,基于拓扑范数描述符和空间范数描述符的QSAR模型可以进一步用于化学物质对梨形四膜虫的毒性估计。
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来源期刊
CiteScore
5.20
自引率
20.00%
发文量
78
审稿时长
>24 weeks
期刊介绍: SAR and QSAR in Environmental Research is an international journal welcoming papers on the fundamental and practical aspects of the structure-activity and structure-property relationships in the fields of environmental science, agrochemistry, toxicology, pharmacology and applied chemistry. A unique aspect of the journal is the focus on emerging techniques for the building of SAR and QSAR models in these widely varying fields. The scope of the journal includes, but is not limited to, the topics of topological and physicochemical descriptors, mathematical, statistical and graphical methods for data analysis, computer methods and programs, original applications and comparative studies. In addition to primary scientific papers, the journal contains reviews of books and software and news of conferences. Special issues on topics of current and widespread interest to the SAR and QSAR community will be published from time to time.
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