{"title":"A computational approach to identifiability analysis for a model of the propagation and control of COVID-19 in Chile.","authors":"Raimund Bürger, Gerardo Chowell, Ilja Kröker, Leidy Yissedt Lara-Díaz","doi":"10.1080/17513758.2023.2256774","DOIUrl":null,"url":null,"abstract":"<p><p>A computational approach is adapted to analyze the parameter identifiability of a compartmental model. The model is intended to describe the progression of the COVID-19 pandemic in Chile during the initial phase in early 2020 when government declared quarantine measures. The computational approach to analyze the structural and practical identifiability is applied in two parts, one for synthetic data and another for some Chilean regional data. The first part defines the identifiable parameter sets when these recover the true parameters used to create the synthetic data. The second part compares the results derived from synthetic data, estimating the identifiable parameter sets from regional Chilean epidemic data. Experiments provide evidence of the loss of identifiability if some initial conditions are estimated, the period of time used to fit is before the peak, and if a significant proportion of the population is involved in quarantine periods.</p>","PeriodicalId":48809,"journal":{"name":"Journal of Biological Dynamics","volume":"17 1","pages":"2256774"},"PeriodicalIF":1.8000,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10620014/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biological Dynamics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/17513758.2023.2256774","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
A computational approach is adapted to analyze the parameter identifiability of a compartmental model. The model is intended to describe the progression of the COVID-19 pandemic in Chile during the initial phase in early 2020 when government declared quarantine measures. The computational approach to analyze the structural and practical identifiability is applied in two parts, one for synthetic data and another for some Chilean regional data. The first part defines the identifiable parameter sets when these recover the true parameters used to create the synthetic data. The second part compares the results derived from synthetic data, estimating the identifiable parameter sets from regional Chilean epidemic data. Experiments provide evidence of the loss of identifiability if some initial conditions are estimated, the period of time used to fit is before the peak, and if a significant proportion of the population is involved in quarantine periods.
期刊介绍：
Journal of Biological Dynamics, an open access journal, publishes state of the art papers dealing with the analysis of dynamic models that arise from biological processes. The Journal focuses on dynamic phenomena at scales ranging from the level of individual organisms to that of populations, communities, and ecosystems in the fields of ecology and evolutionary biology, population dynamics, epidemiology, immunology, neuroscience, environmental science, and animal behavior. Papers in other areas are acceptable at the editors’ discretion. In addition to papers that analyze original mathematical models and develop new theories and analytic methods, the Journal welcomes papers that connect mathematical modeling and analysis to experimental and observational data. The Journal also publishes short notes, expository and review articles, book reviews and a section on open problems.
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