Omics-driven investigation of the biology underlying intrinsic submaximal working capacity and its trainability.

IF 2.5 4区 生物学 Q3 CELL BIOLOGY
Physiological genomics Pub Date : 2023-11-01 Epub Date: 2023-09-04 DOI:10.1152/physiolgenomics.00163.2022
Monalisa Hota, Jacob L Barber, Jonathan J Ruiz-Ramie, Charles S Schwartz, Do Thuy Uyen Ha Lam, Prashant Rao, Michael Y Mi, Daniel H Katz, Jeremy M Robbins, Clary B Clish, Robert E Gerszten, Mark A Sarzynski, Sujoy Ghosh, Claude Bouchard
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引用次数: 0

Abstract

Submaximal exercise capacity is an indicator of cardiorespiratory fitness with clinical and public health implications. Submaximal exercise capacity and its response to exercise programs are characterized by heritability levels of about 40%. Using physical working capacity (power output) at a heart rate of 150 beats/min (PWC150) as an indicator of submaximal exercise capacity in subjects of the HERITAGE Family Study, we have undertaken multi-omics and in silico explorations of the underlying biology of PWC150 and its response to 20 wk of endurance training. Our goal was to illuminate the biological processes and identify panels of genes associated with human variability in intrinsic PWC150 (iPWC150) and its trainability (dPWC150). Our bioinformatics approach was based on a combination of genome-wide association, skeletal muscle gene expression, and plasma proteomics and metabolomics experiments. Genes, proteins, and metabolites showing significant associations with iPWC150 or dPWC150 were further queried for the enrichment of biological pathways. We compared genotype-phenotype associations of emerging candidate genes with reported functional consequences of gene knockouts in mouse models. We investigated the associations between DNA variants and multiple muscle and cardiovascular phenotypes measured in HERITAGE subjects. Two panels of prioritized genes of biological relevance to iPWC150 (13 genes) and dPWC150 (6 genes) were identified, supporting the hypothesis that genes and pathways associated with iPWC150 are different from those underlying dPWC150. Finally, the functions of these genes and pathways suggested that human variation in submaximal exercise capacity is mainly driven by skeletal muscle morphology and metabolism and red blood cell oxygen-carrying capacity.NEW & NOTEWORTHY Multi-omics and in silico explorations of the genes and underlying biology of submaximal exercise capacity and its response to 20 wk of endurance training were undertaken. Prioritized genes were identified: 13 genes for variation in submaximal exercise capacity in the sedentary state and 5 genes for the response level to endurance training, with no overlap between them. Genes and pathways associated with submaximal exercise capacity in the sedentary state are different from those underlying trainability.

奥密克戎驱动的内在亚最大工作能力及其可训练性的生物学研究。
亚最大运动能力是心肺健康的一个指标,具有临床和公共卫生意义。亚最大运动能力及其对运动计划的反应的特征是遗传力水平约为40%。利用心率为150次/分(PWC150)的体力劳动能力(功率输出)作为遗传家族研究受试者次最大运动能力的指标,我们对PWC150的基本生物学及其对20周耐力训练的反应进行了多组学和计算机探索。我们的目标是阐明生物学过程,并鉴定与内在PWC150(iPWC150)及其可训练性(dPWC150)中的人类变异性相关的基因组。我们的生物信息学方法是基于全基因组关联、骨骼肌基因表达、血浆蛋白质组学和代谢组学实验的结合。显示与iPWC150或dPWC150显著相关的基因、蛋白质和代谢产物被进一步询问生物途径的富集。我们比较了新出现的候选基因的基因型-表型关联与小鼠模型中基因敲除的功能后果。我们研究了DNA变异与遗传受试者的多种肌肉和心血管表型之间的关系。鉴定了与iPWC150(13个基因)和dPWC150(6个基因)具有生物学相关性的两组优先基因,支持了与iPWC150相关的基因和途径与dPWC150相关的那些基因和途径不同的假设。最后,这些基因和途径的功能表明,人类亚最大运动能力的变化主要由骨骼肌形态和代谢以及红细胞携氧能力驱动。对亚最大运动能力及其对20周耐力训练的反应的基因和潜在生物学进行了新的和值得注意的多组学和计算机探索。确定了优先基因:13个基因用于久坐状态下次最大运动能力的变化,5个基因用于耐力训练的反应水平,它们之间没有重叠。久坐状态下与次最大运动能力相关的基因和途径与潜在的可训练性不同。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Physiological genomics
Physiological genomics 生物-生理学
CiteScore
6.10
自引率
0.00%
发文量
46
审稿时长
4-8 weeks
期刊介绍: The Physiological Genomics publishes original papers, reviews and rapid reports in a wide area of research focused on uncovering the links between genes and physiology at all levels of biological organization. Articles on topics ranging from single genes to the whole genome and their links to the physiology of humans, any model organism, organ, tissue or cell are welcome. Areas of interest include complex polygenic traits preferably of importance to human health and gene-function relationships of disease processes. Specifically, the Journal has dedicated Sections focused on genome-wide association studies (GWAS) to function, cardiovascular, renal, metabolic and neurological systems, exercise physiology, pharmacogenomics, clinical, translational and genomics for precision medicine, comparative and statistical genomics and databases. For further details on research themes covered within these Sections, please refer to the descriptions given under each Section.
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