Development of an expression-tunable multiple protein synthesis system in cell-free reactions using T7-promoter-variant series.

IF 2.6 Q2 BIOCHEMICAL RESEARCH METHODS
Naoko Senda, Toshihiko Enomoto, Kenta Kihara, Naoki Yamashiro, Naosato Takagi, Daisuke Kiga, Hirokazu Nishida
{"title":"Development of an expression-tunable multiple protein synthesis system in cell-free reactions using T7-promoter-variant series.","authors":"Naoko Senda,&nbsp;Toshihiko Enomoto,&nbsp;Kenta Kihara,&nbsp;Naoki Yamashiro,&nbsp;Naosato Takagi,&nbsp;Daisuke Kiga,&nbsp;Hirokazu Nishida","doi":"10.1093/synbio/ysac029","DOIUrl":null,"url":null,"abstract":"<p><p>New materials with a low environmental load are expected to be generated through synthetic biology. To widely utilize this technology, it is important to create cells with designed biological functions and to control the expression of multiple enzymes. In this study, we constructed a cell-free evaluation system for multiple protein expression, in which synthesis is controlled by T7 promoter variants. The expression of a single protein using the T7 promoter variants showed the expected variety in expression levels, as previously reported. We then examined the expression levels of multiple proteins that are simultaneously produced in a single well to determine whether they can be predicted from the promoter activity values, which were defined from the isolated protein expression levels. When the sum of messenger ribonucleic acid (mRNA) species is small, the experimental protein expression levels can be predicted from the promoter activities (graphical abstract (a)) due to low competition for ribosomes. In other words, by using combinations of T7 promoter variants, we successfully developed a cell-free multiple protein synthesis system with tunable expression. In the presence of large amounts of mRNA, competition for ribosomes becomes an issue (graphical abstract (b)). Accordingly, the translation level of each protein cannot be directly predicted from the promoter activities and is biased by the strength of the ribosome binding site (RBS); a weaker RBS is more affected by competition. Our study provides information regarding the regulated expression of multiple enzymes in synthetic biology.</p>","PeriodicalId":74902,"journal":{"name":"Synthetic biology (Oxford, England)","volume":"7 1","pages":"ysac029"},"PeriodicalIF":2.6000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/fc/14/ysac029.PMC9791696.pdf","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Synthetic biology (Oxford, England)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1093/synbio/ysac029","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 1

Abstract

New materials with a low environmental load are expected to be generated through synthetic biology. To widely utilize this technology, it is important to create cells with designed biological functions and to control the expression of multiple enzymes. In this study, we constructed a cell-free evaluation system for multiple protein expression, in which synthesis is controlled by T7 promoter variants. The expression of a single protein using the T7 promoter variants showed the expected variety in expression levels, as previously reported. We then examined the expression levels of multiple proteins that are simultaneously produced in a single well to determine whether they can be predicted from the promoter activity values, which were defined from the isolated protein expression levels. When the sum of messenger ribonucleic acid (mRNA) species is small, the experimental protein expression levels can be predicted from the promoter activities (graphical abstract (a)) due to low competition for ribosomes. In other words, by using combinations of T7 promoter variants, we successfully developed a cell-free multiple protein synthesis system with tunable expression. In the presence of large amounts of mRNA, competition for ribosomes becomes an issue (graphical abstract (b)). Accordingly, the translation level of each protein cannot be directly predicted from the promoter activities and is biased by the strength of the ribosome binding site (RBS); a weaker RBS is more affected by competition. Our study provides information regarding the regulated expression of multiple enzymes in synthetic biology.

Abstract Image

Abstract Image

Abstract Image

利用t7启动子变异系列在无细胞反应中建立表达可调的多蛋白合成系统。
低环境负荷的新材料有望通过合成生物学产生。为了广泛应用这一技术,重要的是创造具有设计生物功能的细胞和控制多种酶的表达。在本研究中,我们构建了一个多种蛋白表达的无细胞评价系统,该系统的合成由T7启动子变体控制。使用T7启动子变体的单个蛋白的表达显示出预期的表达水平变化,如先前报道的那样。然后,我们检查了在单孔中同时产生的多个蛋白质的表达水平,以确定是否可以通过启动子活性值来预测它们,启动子活性值是由分离的蛋白质表达水平定义的。当信使核糖核酸(mRNA)种数较少时,由于核糖体竞争较低,可以通过启动子活性预测实验蛋白的表达水平(图形摘要(a))。换句话说,通过使用T7启动子变体的组合,我们成功地开发了具有可调节表达的无细胞多蛋白合成系统。在大量mRNA存在的情况下,对核糖体的竞争成为一个问题(图形摘要(b))。因此,每种蛋白质的翻译水平不能从启动子活性直接预测,并且受到核糖体结合位点(RBS)强度的影响;实力较弱的苏格兰皇家银行更容易受到竞争的影响。我们的研究为合成生物学中多种酶的调控表达提供了信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信