{"title":"Characterization and Expression Analysis of <i>B12D-Like</i> Gene From Pearl Millet.","authors":"Zainab M Almutairi","doi":"10.1177/11769343221142285","DOIUrl":null,"url":null,"abstract":"<p><p><i>B12D-Like</i> is a member of the B12D domain-containing protein family, which includes several transmembrane proteins in plants. In this study, the cDNA of <i>PgB12D-Like</i> from <i>Pennisetum glaucum subsp. monodii</i> (Maire) Brunken was sequenced and characterized. The 446-bp cDNA for <i>PgB12D-Like</i> encodes for a deduced protein of 95 amino acids. The PgB12D-Like protein contains a B12D domain and a transmembrane helix embedded in the mitochondrial membrane. Cis-regulatory elements analysis reveals binding sites for various transcription factors involved in responses to stress, light, and plant hormones in the putative promoter sequence for <i>PgB12D-Like</i>. Several proteins involved in floral organ development were also found to have binding sites in the <i>PgB12D-Like</i> promoter, such as agamous-like proteins and squamosa promoter binding proteins. Real-time PCR reveals high expression of <i>PgB12D-Like</i> in flowers during heading, whereas its expression in a 4-day-old seedling shoot was the lowest. Moreover, cold, drought, and heat stress were found to upregulate <i>PgB12D-Like</i>, whereas gibberellic acid downregulated its expression in seedlings. The present study helps to uncover the function of the <i>B12D-Like</i> in response to plant hormones and abiotic stress during <i>P. glaucum</i> development.</p>","PeriodicalId":50472,"journal":{"name":"Evolutionary Bioinformatics","volume":"18 ","pages":"11769343221142285"},"PeriodicalIF":1.7000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/f9/c6/10.1177_11769343221142285.PMC9793006.pdf","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Evolutionary Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1177/11769343221142285","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"EVOLUTIONARY BIOLOGY","Score":null,"Total":0}
引用次数: 1
Abstract
B12D-Like is a member of the B12D domain-containing protein family, which includes several transmembrane proteins in plants. In this study, the cDNA of PgB12D-Like from Pennisetum glaucum subsp. monodii (Maire) Brunken was sequenced and characterized. The 446-bp cDNA for PgB12D-Like encodes for a deduced protein of 95 amino acids. The PgB12D-Like protein contains a B12D domain and a transmembrane helix embedded in the mitochondrial membrane. Cis-regulatory elements analysis reveals binding sites for various transcription factors involved in responses to stress, light, and plant hormones in the putative promoter sequence for PgB12D-Like. Several proteins involved in floral organ development were also found to have binding sites in the PgB12D-Like promoter, such as agamous-like proteins and squamosa promoter binding proteins. Real-time PCR reveals high expression of PgB12D-Like in flowers during heading, whereas its expression in a 4-day-old seedling shoot was the lowest. Moreover, cold, drought, and heat stress were found to upregulate PgB12D-Like, whereas gibberellic acid downregulated its expression in seedlings. The present study helps to uncover the function of the B12D-Like in response to plant hormones and abiotic stress during P. glaucum development.
期刊介绍:
Evolutionary Bioinformatics is an open access, peer reviewed international journal focusing on evolutionary bioinformatics. The journal aims to support understanding of organismal form and function through use of molecular, genetic, genomic and proteomic data by giving due consideration to its evolutionary context.