Combining molecular modelling and experimental approaches to gain mechanistic insights into the LuxP drug target in Streptococcus pyogens.

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Abdulaziz S Alothaim, Wardah A Alhoqail, Muniraj Menakha, Rajendran Vijayakumar
{"title":"Combining molecular modelling and experimental approaches to gain mechanistic insights into the LuxP drug target in <i>Streptococcus pyogens</i>.","authors":"Abdulaziz S Alothaim, Wardah A Alhoqail, Muniraj Menakha, Rajendran Vijayakumar","doi":"10.1080/07391102.2023.2252079","DOIUrl":null,"url":null,"abstract":"<p><p>Autoinducer-2 can mediate inter- and intra-species communication signal between bacteria and these signals from AI-2 is noted from limited species of bacteria. In humans, <i>S. pyogenes</i> is a pathogen that causes a wide range of illnesses and can survive in the host system and transmit infection. The process by which <i>S. pyogenes</i> acquires the competence to live and disseminate infection remains unknown. We hypothesized that AI-2 and their receptors would play a significant role during infection, and for that present investigation provides the experimental and molecular insights. In the absence of details about the receptor LuxP and LuxQ, the screening approach provides supporting insights. The evolutionary relationship and similarities of the PBP domain (Spy 1535) and the signal transmission PDZ domain (Spy 1536) were studied in relation to their counterparts in other bacteria. Molecular docking and modeling confirmed the domain-enhanced specificity for AI-2 binding. <i>In vitro</i> studies showed that AI-2, which is present in the cell-free supernatant of <i>S. pyogenes</i>, regulates luminescence in <i>P. luminous</i> and biofilm development in <i>E. coli</i> using the LuxS reporter genes. Examination of <i>S. pyogenes</i> gene expression revealed modulation of virulence genes when the pathogen was exposed to <i>V. harveyi</i> HSL and AI-2. Therefore, <i>S. pyogenes</i> pathogenicity is sequentially regulated by AI-2 it acquires from other commensal bacteria. Overall, this study lays the groundwork for understanding the signalling mechanism from AI-2, which are critical to the pathogenic mechanism of <i>S. pyogenes</i>.Communicated by Ramaswamy H. Sarma.</p>","PeriodicalId":15272,"journal":{"name":"Journal of Biomolecular Structure & Dynamics","volume":" ","pages":"9494-9504"},"PeriodicalIF":2.7000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomolecular Structure & Dynamics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/07391102.2023.2252079","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/8/29 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Autoinducer-2 can mediate inter- and intra-species communication signal between bacteria and these signals from AI-2 is noted from limited species of bacteria. In humans, S. pyogenes is a pathogen that causes a wide range of illnesses and can survive in the host system and transmit infection. The process by which S. pyogenes acquires the competence to live and disseminate infection remains unknown. We hypothesized that AI-2 and their receptors would play a significant role during infection, and for that present investigation provides the experimental and molecular insights. In the absence of details about the receptor LuxP and LuxQ, the screening approach provides supporting insights. The evolutionary relationship and similarities of the PBP domain (Spy 1535) and the signal transmission PDZ domain (Spy 1536) were studied in relation to their counterparts in other bacteria. Molecular docking and modeling confirmed the domain-enhanced specificity for AI-2 binding. In vitro studies showed that AI-2, which is present in the cell-free supernatant of S. pyogenes, regulates luminescence in P. luminous and biofilm development in E. coli using the LuxS reporter genes. Examination of S. pyogenes gene expression revealed modulation of virulence genes when the pathogen was exposed to V. harveyi HSL and AI-2. Therefore, S. pyogenes pathogenicity is sequentially regulated by AI-2 it acquires from other commensal bacteria. Overall, this study lays the groundwork for understanding the signalling mechanism from AI-2, which are critical to the pathogenic mechanism of S. pyogenes.Communicated by Ramaswamy H. Sarma.

结合分子建模和实验方法,从机理上深入了解化脓性链球菌中的 LuxP 药物靶点。
自体诱导体-2 可以介导细菌间和细菌种内的交流信号,这些来自自体诱导体-2 的信号是从有限的细菌物种中发现的。在人类中,化脓性链球菌是一种可导致多种疾病的病原体,可在宿主系统中存活并传播感染。化脓性链球菌获得生存和传播感染能力的过程尚不清楚。我们假设 AI-2 及其受体将在感染过程中发挥重要作用,本研究为此提供了实验和分子见解。在缺乏有关受体 LuxP 和 LuxQ 的详细信息的情况下,筛选方法提供了支持性的见解。研究了 PBP 结构域(Spy 1535)和信号传输 PDZ 结构域(Spy 1536)与其他细菌中对应结构域的进化关系和相似性。分子对接和建模证实了该结构域增强了与 AI-2 结合的特异性。体外研究表明,存在于化脓性链球菌无细胞上清液中的 AI-2 能利用 LuxS 报告基因调节发光杆菌的发光和大肠杆菌的生物膜发育。化脓性链球菌基因表达的研究表明,当病原体暴露于 V. harveyi HSL 和 AI-2 时,毒力基因会发生改变。因此,化脓性链球菌的致病性受其从其他共生细菌中获得的 AI-2 的顺序调节。总之,这项研究为了解AI-2的信号机制奠定了基础,而AI-2对于化脓性链球菌的致病机制至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信