{"title":"Assessment of Prediction Tasks and Time Window Selection in Temporal Modeling of Electronic Health Record Data: a Systematic Review.","authors":"Sarah Pungitore, Vignesh Subbian","doi":"10.1007/s41666-023-00143-4","DOIUrl":null,"url":null,"abstract":"<p><p>Temporal electronic health record (EHR) data are often preferred for clinical prediction tasks because they offer more complete representations of a patient's pathophysiology than static data. A challenge when working with temporal EHR data is problem formulation, which includes defining the time windows of interest and the prediction task. Our objective was to conduct a systematic review that assessed the definition and reporting of concepts relevant to temporal clinical prediction tasks. We searched PubMed® and IEEE Xplore® databases for studies from January 1, 2010 applying machine learning models to EHR data for patient outcome prediction. Publications applying time-series methods were selected for further review. We identified 92 studies and summarized them by clinical context and definition and reporting of the prediction problem. For the time windows of interest, 12 studies did not discuss window lengths, 57 used a single set of window lengths, and 23 evaluated the relationship between window length and model performance. We also found that 72 studies had appropriate reporting of the prediction task. However, evaluation of prediction problem formulation for temporal EHR data was complicated by heterogeneity in assessing and reporting of these concepts. Even among studies modeling similar clinical outcomes, there were variations in terminology used to describe the prediction problem, rationale for window lengths, and determination of the outcome of interest. As temporal modeling using EHR data expands, minimal reporting standards should include time-series specific concerns to promote rigor and reproducibility in future studies and facilitate model implementation in clinical settings.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s41666-023-00143-4.</p>","PeriodicalId":36444,"journal":{"name":"Journal of Healthcare Informatics Research","volume":"7 3","pages":"313-331"},"PeriodicalIF":5.9000,"publicationDate":"2023-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10449760/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Healthcare Informatics Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s41666-023-00143-4","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/9/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"Computer Science","Score":null,"Total":0}
引用次数: 0
Abstract
Temporal electronic health record (EHR) data are often preferred for clinical prediction tasks because they offer more complete representations of a patient's pathophysiology than static data. A challenge when working with temporal EHR data is problem formulation, which includes defining the time windows of interest and the prediction task. Our objective was to conduct a systematic review that assessed the definition and reporting of concepts relevant to temporal clinical prediction tasks. We searched PubMed® and IEEE Xplore® databases for studies from January 1, 2010 applying machine learning models to EHR data for patient outcome prediction. Publications applying time-series methods were selected for further review. We identified 92 studies and summarized them by clinical context and definition and reporting of the prediction problem. For the time windows of interest, 12 studies did not discuss window lengths, 57 used a single set of window lengths, and 23 evaluated the relationship between window length and model performance. We also found that 72 studies had appropriate reporting of the prediction task. However, evaluation of prediction problem formulation for temporal EHR data was complicated by heterogeneity in assessing and reporting of these concepts. Even among studies modeling similar clinical outcomes, there were variations in terminology used to describe the prediction problem, rationale for window lengths, and determination of the outcome of interest. As temporal modeling using EHR data expands, minimal reporting standards should include time-series specific concerns to promote rigor and reproducibility in future studies and facilitate model implementation in clinical settings.
Supplementary information: The online version contains supplementary material available at 10.1007/s41666-023-00143-4.
期刊介绍:
Journal of Healthcare Informatics Research serves as a publication venue for the innovative technical contributions highlighting analytics, systems, and human factors research in healthcare informatics.Journal of Healthcare Informatics Research is concerned with the application of computer science principles, information science principles, information technology, and communication technology to address problems in healthcare, and everyday wellness. Journal of Healthcare Informatics Research highlights the most cutting-edge technical contributions in computing-oriented healthcare informatics. The journal covers three major tracks: (1) analytics—focuses on data analytics, knowledge discovery, predictive modeling; (2) systems—focuses on building healthcare informatics systems (e.g., architecture, framework, design, engineering, and application); (3) human factors—focuses on understanding users or context, interface design, health behavior, and user studies of healthcare informatics applications. Topics include but are not limited to: · healthcare software architecture, framework, design, and engineering;· electronic health records· medical data mining· predictive modeling· medical information retrieval· medical natural language processing· healthcare information systems· smart health and connected health· social media analytics· mobile healthcare· medical signal processing· human factors in healthcare· usability studies in healthcare· user-interface design for medical devices and healthcare software· health service delivery· health games· security and privacy in healthcare· medical recommender system· healthcare workflow management· disease profiling and personalized treatment· visualization of medical data· intelligent medical devices and sensors· RFID solutions for healthcare· healthcare decision analytics and support systems· epidemiological surveillance systems and intervention modeling· consumer and clinician health information needs, seeking, sharing, and use· semantic Web, linked data, and ontology· collaboration technologies for healthcare· assistive and adaptive ubiquitous computing technologies· statistics and quality of medical data· healthcare delivery in developing countries· health systems modeling and simulation· computer-aided diagnosis