在后COVID-19时代,使用Jupyter笔记本为生物信息学教授Python编程。

IF 1.2 4区 教育学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Yash Munnalal Gupta, Satwika Nindya Kirana, Somjit Homchan, Supatcharee Tanasarnpaiboon
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引用次数: 1

摘要

新冠肺炎疫情迫使生物信息学课程从现场教学转向远程学习。这种转变促使教学方法和实验室活动发生了变化。学生需要对DNA序列有基本的了解,以及如何使用自定义脚本进行分析。为了便于学习,我们修改了课程,使用Jupyter Notebook,它提供了一种为基本DNA序列分析编写自定义脚本的替代方法。这种方法允许学生在远程工作时获得必要的技能。它是一个通用且用户友好的平台,可用于将解释、代码和结果组合到一个文档中。该功能使学生能够与代码和结果进行交互,使学习过程更加引人入胜和有效。Jupyter Notebook为学习基本Python脚本和基因组学提供了一种混合方法,在新冠肺炎大流行期间对远程教学有效。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Teaching Python programming for bioinformatics with Jupyter notebook in the Post-COVID-19 era

The COVID-19 pandemic has forced the Bioinformatics course to switch from on-site teaching to remote learning. This shift has prompted a change in teaching methods and laboratory activities. Students need to have a basic understanding of DNA sequences and how to analyze them using custom scripts. To facilitate learning, we have modified the course to use Jupyter Notebook, which offers an alternative approach to writing custom scripts for basic DNA sequence analysis. This approach allows students to acquire the necessary skills while working remotely. It is a versatile and user-friendly platform that can be used to combine explanations, code, and results in a single document. This feature enables students to interact with the code and results, making the learning process more engaging and effective. Jupyter Notebook provides a hybrid approach to learning basic Python scripting and genomics that is effective for remote teaching and learning during the COVID-19 pandemic.

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来源期刊
Biochemistry and Molecular Biology Education
Biochemistry and Molecular Biology Education 生物-生化与分子生物学
CiteScore
2.60
自引率
14.30%
发文量
99
审稿时长
6-12 weeks
期刊介绍: The aim of BAMBED is to enhance teacher preparation and student learning in Biochemistry, Molecular Biology, and related sciences such as Biophysics and Cell Biology, by promoting the world-wide dissemination of educational materials. BAMBED seeks and communicates articles on many topics, including: Innovative techniques in teaching and learning. New pedagogical approaches. Research in biochemistry and molecular biology education. Reviews on emerging areas of Biochemistry and Molecular Biology to provide background for the preparation of lectures, seminars, student presentations, dissertations, etc. Historical Reviews describing "Paths to Discovery". Novel and proven laboratory experiments that have both skill-building and discovery-based characteristics. Reviews of relevant textbooks, software, and websites. Descriptions of software for educational use. Descriptions of multimedia materials such as tutorials on various aspects of biochemistry and molecular biology.
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