湛江湾paes降解海洋菌株phocaicum分枝杆菌RL-HY01的全基因组分析

IF 1.3 4区生物学 Q4 GENETICS & HEREDITY

Marine genomics Pub Date : 2023-06-01 DOI:10.1016/j.margen.2023.101019

Yuduan Ou , John L. Zhou , Yang Jia , Mei Liang , Hanqiao Hu , Lei Ren

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引用次数: 0

摘要

从湛江湾分离到一株具有降解邻苯二甲酸酯类（PAEs）能力的海洋细菌——福建分枝杆菌RL-HY01。本文报道了菌株RL-HY01的全基因组序列。菌株RL-HY01的基因组包含一条6064759bp的圆形染色体，G+C含量为66.93mol%。该基因组包含5681个预测的蛋白质编码基因、57个tRNA基因和6个rRNA基因。进一步鉴定了可能参与PAEs代谢的基因和基因簇。phocaicum分枝杆菌RL-HY01基因组将有助于加深我们对PAEs在海洋生态系统中命运的理解。

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Complete genome of Mycolicibacterium phocaicum RL-HY01, a PAEs-degrading marine bacterial strain isolated from Zhanjiang Bay, China

Mycolicibacterium phocaicum RL-HY01, a marine bacterial strain with the capability to degrade phthalic acid esters (PAEs), was isolated from Zhanjiang Bay, China. Here, the complete genome sequence of strain RL-HY01 was presented. The genome of strain RL-HY01 contains one circular chromosome of 6,064,759 bp with a G + C content of 66.93 mol%. The genome contains 5681 predicted protein-encoding genes, 57 tRNA genes, and 6 rRNA genes. Genes and gene clusters potentially involved in the metabolism of PAEs were further identified. The genome Mycolicibacterium phocaicum RL-HY01 will be helpful for advancing our understanding of the fate of PAEs in marine ecosystem.

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来源期刊

Marine genomics 生物-遗传学

CiteScore

3.60

自引率

5.30%

发文量

审稿时长

29 days

期刊介绍： The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.