pyoncopprint:用于绘制oncopprint的python包。

Q2 Agricultural and Biological Sciences

Genomics and Informatics Pub Date : 2023-03-01 DOI:10.5808/gi.22079

Jeongbin Park, Nagarajan Paramasivam

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引用次数: 0

摘要

oncopprint是一种在测序数据中可视化遗传变异概览的绘图，已广泛应用于癌症基因组学领域。然而，目前还没有能够生成oncopprint的Python库，在基于Python的遗传变异分析管道中绘制oncopprint是一个很大的麻烦。本文介绍了一个新的Python包pyoncopprint，它可以很容易地在Python中绘制oncopprint。该软件包基于现有广泛使用的科学绘图库Matplotlib，生成的绘图易于根据各种需求进行调整。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

PyOncoPrint: a python package for plotting OncoPrints.

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PyOncoPrint: a python package for plotting OncoPrints.

OncoPrint, the plot to visualize an overview of genetic variants in sequencing data, has been widely used in the field of cancer genomics. However, still, there have been no Python libraries capable to generate OncoPrint yet, a big hassle to plot OncoPrints within Python-based genetic variants analysis pipelines. This paper introduces a new Python package PyOncoPrint, which can be easily used to plot OncoPrints in Python. The package is based on the existing widely used scientific plotting library Matplotlib, the resulting plots are easy to be adjusted for various needs.

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来源期刊

Genomics and Informatics Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics

CiteScore

1.90

自引率

0.00%

发文量

审稿时长

12 weeks