非编码变体功能注释的系统分析和资源。

IF 0.8 4区 生物学 Q4 GENETICS & HEREDITY
Martin Kircher, Kerstin U Ludwig
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引用次数: 1

摘要

鉴定个体基因组中的遗传变异现在是人类遗传研究和诊断的常规程序。然而,对于许多变异,没有足够的证据来确定致病作用,特别是对于非编码区的变异。此外,候选变异的绝对数量使得在个体分析中进行测试实际上是不可能的。虽然正在开发可扩展的方法,但方法和资源的选择以及给定框架对特定疾病或特征的应用仍然是主要挑战。这限制了全基因组关联研究和基因组测序结果的翻译。本文讨论了可用于非编码变异功能注释的计算和实验方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Systematic assays and resources for the functional annotation of non-coding variants.

Identification of genetic variation in individual genomes is now a routine procedure in human genetic research and diagnostics. For many variants, however, insufficient evidence is available to establish a pathogenic effect, particularly for variants in non-coding regions. Furthermore, the sheer number of candidate variants renders testing in individual assays virtually impossible. While scalable approaches are being developed, the selection of methods and resources, and the application of a given framework to a particular disease or trait remain major challenges. This limits the translation of results from both genome-wide association studies and genome sequencing. Here, we discuss computational and experimental approaches available for functional annotation of non-coding variation.

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来源期刊
Medizinische Genetik
Medizinische Genetik Medicine-Genetics (clinical)
CiteScore
1.40
自引率
9.10%
发文量
48
审稿时长
>12 weeks
期刊介绍: medizinischegenetik is a scientific journal that is owned and published by the German Society of Human Genetics e.V. since 1989. The journal was founded by Prof. Jan Murken, München. Self-published until 2006, from 2007-2019 published at Springer Verlag and since 2020 at De Gruyter. medizinischegenetik serves education and training among colleagues, the interdisciplinary exchange of knowledge in all areas of human genetics in clinics, practice, research and teaching. Each issue of the quarterly journal deals with a focus that provides a comprehensive overview of current developments in specific clinical pictures, technical developments and therapeutic approaches. All reviews are written in English language. The journal thus creates a platform for the international exchange of knowledge and increased awareness of German research activities in the scientific community. In addition, medizinischegenetik contains information on activities in its own subject in the German-language section. This includes conference reports, association announcements, personnel matters, statements and guidelines. With health policy questions, historical retrospectives and comments on current developments, the profession takes a stand on human genetic issues in Germany, Austria and Switzerland.
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