Daniel Maddock , Carrie Brady , Sandra Denman , Dawn Arnold
{"title":"英国本土栎树根际分离的杉木栎及两新种——bosscaweniae sp. 11和cledunensis sp. 11的描述","authors":"Daniel Maddock , Carrie Brady , Sandra Denman , Dawn Arnold","doi":"10.1016/j.syapm.2023.126399","DOIUrl":null,"url":null,"abstract":"<div><p>While investigating the role of the rhizosphere in the development of Acute Oak Decline, bacterial strains belonging to the family <em>Enterobacteriaceae</em> were isolated from rhizosphere soil following enrichment for the Enterobacterales. Partial sequencing of several housekeeping genes showed that these strains could not be assigned to an existing genus. Overall, 16 strains were investigated using a polyphasic approach to determine their taxonomic status. This involved phenotypic testing and fatty acid analysis paired with phylogenetic analyses of 16S rRNA and housekeeping gene sequences, as well as phylogenomic analysis of whole genome sequences. Phylogenomic and phylogenetic analyses consistently demonstrated that the 16 isolates could be separated into two distinct clusters in a monophyletic clade situated between the genera <em>Cedecea</em> and <em>Buttiauxella.</em> The two clusters could be genotypically and phenotypically differentiated from each other and from their closest neighbours. As such we propose the description of <em>Dryocola boscaweniae</em> gen. nov. sp. nov. (type strain H6W4<sup>T</sup> = CCUG 76177<sup>T</sup> = LMG 32610<sup>T</sup>) and <em>Dryocola clanedunesis</em> sp. nov. (type strain H11S18<sup>T</sup> = CCUG 76181<sup>T</sup> = LMG 32611<sup>T</sup>)<em>.</em></p></div>","PeriodicalId":22124,"journal":{"name":"Systematic and applied microbiology","volume":"46 2","pages":"Article 126399"},"PeriodicalIF":3.3000,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Description of Dryocola gen. nov. and two novel species, Dryocola boscaweniae sp. nov. and Dryocola clanedunensis sp. nov. isolated from the rhizosphere of native British oaks\",\"authors\":\"Daniel Maddock , Carrie Brady , Sandra Denman , Dawn Arnold\",\"doi\":\"10.1016/j.syapm.2023.126399\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>While investigating the role of the rhizosphere in the development of Acute Oak Decline, bacterial strains belonging to the family <em>Enterobacteriaceae</em> were isolated from rhizosphere soil following enrichment for the Enterobacterales. Partial sequencing of several housekeeping genes showed that these strains could not be assigned to an existing genus. Overall, 16 strains were investigated using a polyphasic approach to determine their taxonomic status. This involved phenotypic testing and fatty acid analysis paired with phylogenetic analyses of 16S rRNA and housekeeping gene sequences, as well as phylogenomic analysis of whole genome sequences. Phylogenomic and phylogenetic analyses consistently demonstrated that the 16 isolates could be separated into two distinct clusters in a monophyletic clade situated between the genera <em>Cedecea</em> and <em>Buttiauxella.</em> The two clusters could be genotypically and phenotypically differentiated from each other and from their closest neighbours. As such we propose the description of <em>Dryocola boscaweniae</em> gen. nov. sp. nov. (type strain H6W4<sup>T</sup> = CCUG 76177<sup>T</sup> = LMG 32610<sup>T</sup>) and <em>Dryocola clanedunesis</em> sp. nov. (type strain H11S18<sup>T</sup> = CCUG 76181<sup>T</sup> = LMG 32611<sup>T</sup>)<em>.</em></p></div>\",\"PeriodicalId\":22124,\"journal\":{\"name\":\"Systematic and applied microbiology\",\"volume\":\"46 2\",\"pages\":\"Article 126399\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2023-04-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Systematic and applied microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0723202023000085\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Systematic and applied microbiology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0723202023000085","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
Description of Dryocola gen. nov. and two novel species, Dryocola boscaweniae sp. nov. and Dryocola clanedunensis sp. nov. isolated from the rhizosphere of native British oaks
While investigating the role of the rhizosphere in the development of Acute Oak Decline, bacterial strains belonging to the family Enterobacteriaceae were isolated from rhizosphere soil following enrichment for the Enterobacterales. Partial sequencing of several housekeeping genes showed that these strains could not be assigned to an existing genus. Overall, 16 strains were investigated using a polyphasic approach to determine their taxonomic status. This involved phenotypic testing and fatty acid analysis paired with phylogenetic analyses of 16S rRNA and housekeeping gene sequences, as well as phylogenomic analysis of whole genome sequences. Phylogenomic and phylogenetic analyses consistently demonstrated that the 16 isolates could be separated into two distinct clusters in a monophyletic clade situated between the genera Cedecea and Buttiauxella. The two clusters could be genotypically and phenotypically differentiated from each other and from their closest neighbours. As such we propose the description of Dryocola boscaweniae gen. nov. sp. nov. (type strain H6W4T = CCUG 76177T = LMG 32610T) and Dryocola clanedunesis sp. nov. (type strain H11S18T = CCUG 76181T = LMG 32611T).
期刊介绍:
Systematic and Applied Microbiology deals with various aspects of microbial diversity and systematics of prokaryotes. It focuses on Bacteria and Archaea; eukaryotic microorganisms will only be considered in rare cases. The journal perceives a broad understanding of microbial diversity and encourages the submission of manuscripts from the following branches of microbiology: