芹菜素衍生物抗衰老分子对接及毒性试验

E. Mumpuni, E. Mulatsari
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引用次数: 2

摘要

氧化应激机制下引起衰老的内在因素是透明质酸酶和弹性酶等酶。抗氧化剂是一种生物活性化合物,对对抗氧化应激非常重要,氧化应激会导致衰老。据报道,修饰的化合物o121-15f芹菜素可以作为抗氧化剂。本研究的目的是利用pdb与人靶蛋白的分子对接方法,确定可能抑制透明质酸酶和弹性酶的芹菜素衍生物候选化合物。id: 2JIE和5JMY。分子对接是在windows操作系统下使用PLANTS、YASARA和MarVinSketch等软件完成的。用PyMol可视化了配体和氨基酸残基之间的键合模式。在50个芹菜素衍生物中,有9个化合物抑制透明质酸酶的对接得分低于芹菜素,5个化合物抑制弹性酶的对接得分低于芹菜素。3′6-二胺芹菜素抑制透明质酸酶(2JIE)的对接评分最低(-62.39),3′胺芹菜素抑制弹性酶(5JMY)的对接评分最低(-91.31)。该配体的活性对接构象与靶蛋白的结合相互作用已被确定,并显示了大多数被认为影响透明质酸酶和弹性酶抑制过程的氨基酸残基,如VAL_710, GLU_762和VAL_763。基于这些结果,有一些抗氧化剂的芹菜素衍生物化合物被推荐作为抗衰老剂。关键词:芹菜素,抗氧化,抗衰老,分子对接
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Molecular Docking and Toxicity Test of Apigenin Derivative Compounds as an Anti-Aging Agent
The intrinsic factors that caused aging are enzymes such as hyaluronidase and elastase by oxidative stress mechanism. Antioxidants are the bioactive compounds which are highly important to fight against oxidative stress that can cause aging. Modified compounds o121–15f apigenin have reported can act as an antioxidant. The aim of this study was to determine candidate of apigenin derivative compounds that were potential to inhibit hyaluronidase and elastase enzyme by using molecular docking method with human target protein with pdb.id : 2JIE and 5JMY. Molecular docking was done using windows operating system with several softwares, i.e: PLANTS, YASARA and MarVinSketch. Visualization of bonding modes between the ligand and amino acid residues was done with PyMol. Of the 50 apigenin derivative compounds tested, obtained 9 compounds with lower docking scores than apigenin in inhibiting hyaluronidase and 5 compounds in inhibiting elastase enzyme. 3’6-diamineapigenin had the lowest docking score (-62.39) in inhibiting hyaluronidase enzyme (2JIE) and 3’amineapigenin had the lowest docking score (-91.31) in inhibiting elastase enzyme (5JMY). The binding interactions of the actively docked conformations of the ligand and the target protein have been identified and showed the most amino acid residues that considered affect hyaluronidase and elastase inhibition process such as VAL_710, GLU_762 and VAL_763. Based on these results, there are some antioxidants of the apigenin derivative compounds that recommended as an anti-aging agent. Keywords: apigenin, antioxidant, anti-aging, molecular docking
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