Dan Wang, Binyu Cui, Hanyu Guo, Yaxi Liu, Shuming Nie
{"title":"非生物胁迫条件下欧洲旱金莲 CBF 转录因子家族的全基因组鉴定和表达分析。","authors":"Dan Wang, Binyu Cui, Hanyu Guo, Yaxi Liu, Shuming Nie","doi":"10.1080/15592324.2022.2086733","DOIUrl":null,"url":null,"abstract":"<p><p>C-repeat binding factor (CBF) subfamily genes encoding transcriptional activators are members of the AP2/ERF superfamily. CBFs play important roles in plant tolerance to abiotic stress. In this study, we identified and analyzed the structure, phylogeny, conserved motifs, and expression profiles of 12 CBFs of the grass species <i>Lolium perenne</i> cultured under abiotic stress. The identified LpCBFs were grouped into three phylogenetic clades according to their protein structures and motif organizations. <i>LpCBF</i> expression was differentially induced by cold, heat, water deficit, salinity, and abscisic acid, among which cold treatment induced <i>LpCBF</i> gene expression significantly. Furthermore, association network analysis indicated that different proteins, including certain stress-related proteins, potentially interact with LpCBFs. Altogether, these findings will enhance our understanding of LpCBFs protein structure and function in the regulation of <i>L. perenne</i> stress responses. Our results will provide valuable information for further functional research of LpCBF proteins in <i>L. perenne</i> stress resistance.</p>","PeriodicalId":19364,"journal":{"name":"Notulae Botanicae Horti Agrobotanici Cluj-napoca","volume":"44 1","pages":"2086733"},"PeriodicalIF":1.4000,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10730156/pdf/","citationCount":"5","resultStr":"{\"title\":\"Genome-wide identification and expression analysis of the CBF transcription factor family in <i>Lolium perenne</i> under abiotic stress.\",\"authors\":\"Dan Wang, Binyu Cui, Hanyu Guo, Yaxi Liu, Shuming Nie\",\"doi\":\"10.1080/15592324.2022.2086733\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>C-repeat binding factor (CBF) subfamily genes encoding transcriptional activators are members of the AP2/ERF superfamily. CBFs play important roles in plant tolerance to abiotic stress. In this study, we identified and analyzed the structure, phylogeny, conserved motifs, and expression profiles of 12 CBFs of the grass species <i>Lolium perenne</i> cultured under abiotic stress. The identified LpCBFs were grouped into three phylogenetic clades according to their protein structures and motif organizations. <i>LpCBF</i> expression was differentially induced by cold, heat, water deficit, salinity, and abscisic acid, among which cold treatment induced <i>LpCBF</i> gene expression significantly. Furthermore, association network analysis indicated that different proteins, including certain stress-related proteins, potentially interact with LpCBFs. Altogether, these findings will enhance our understanding of LpCBFs protein structure and function in the regulation of <i>L. perenne</i> stress responses. Our results will provide valuable information for further functional research of LpCBF proteins in <i>L. perenne</i> stress resistance.</p>\",\"PeriodicalId\":19364,\"journal\":{\"name\":\"Notulae Botanicae Horti Agrobotanici Cluj-napoca\",\"volume\":\"44 1\",\"pages\":\"2086733\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2023-12-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10730156/pdf/\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Notulae Botanicae Horti Agrobotanici Cluj-napoca\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/15592324.2022.2086733\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2022/6/17 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q3\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Notulae Botanicae Horti Agrobotanici Cluj-napoca","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/15592324.2022.2086733","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/6/17 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
Genome-wide identification and expression analysis of the CBF transcription factor family in Lolium perenne under abiotic stress.
C-repeat binding factor (CBF) subfamily genes encoding transcriptional activators are members of the AP2/ERF superfamily. CBFs play important roles in plant tolerance to abiotic stress. In this study, we identified and analyzed the structure, phylogeny, conserved motifs, and expression profiles of 12 CBFs of the grass species Lolium perenne cultured under abiotic stress. The identified LpCBFs were grouped into three phylogenetic clades according to their protein structures and motif organizations. LpCBF expression was differentially induced by cold, heat, water deficit, salinity, and abscisic acid, among which cold treatment induced LpCBF gene expression significantly. Furthermore, association network analysis indicated that different proteins, including certain stress-related proteins, potentially interact with LpCBFs. Altogether, these findings will enhance our understanding of LpCBFs protein structure and function in the regulation of L. perenne stress responses. Our results will provide valuable information for further functional research of LpCBF proteins in L. perenne stress resistance.
期刊介绍:
Notulae Botanicae Horti Agrobotanici Cluj-Napoca is a peer-reviewed biannual journal aimed at disseminating significant research and original papers, critical reviews and short reviews. The subjects refer on plant biodiversity, genetics and plant breeding, development of new methodologies that can be of interest to a wide audience of plant scientists in all areas of plant biology, agriculture, horticulture and forestry. The journal encourages authors to frame their research questions and discuss their results in terms of the major questions of plant sciences, thereby maximizing the impact and value of their research, and thus in favor of spreading their studies outcome. The papers must be of potential interest to a significant number of scientists and, if specific to a local situation, must be relevant to a wide body of knowledge in life sciences. Articles should make a significant contribution to the advancement of knowledge or toward a better understanding of existing biological and agricultural concepts. An international Editorial Board advises the journal. The total content of the journal may be used for educational, non-profit purposes without regard to copyright. The distribution of the material is encouraged with the condition that the authors and the source (Notulae Botanicae Horti Agrobotanici Cluj-Napoca or JCR abbrev. title Not Bot Horti Agrobo) are mentioned.