在其他链霉菌的基因组中发现了与蓝链霉菌属S136相似的序列

Q4 Biochemistry, Genetics and Molecular Biology
L. Polishchuk, V. Lukyanchuk
{"title":"在其他链霉菌的基因组中发现了与蓝链霉菌属S136相似的序列","authors":"L. Polishchuk, V. Lukyanchuk","doi":"10.15407/microbiolj85.03.012","DOIUrl":null,"url":null,"abstract":"The aim of the work is to identify strains of streptomycetes in the genomes of which there are nucleotide sequences similar to the gene cluster determining the synthesis of landomycin A (lan-cluster) and establish the level of similarity of their primary structures and organizations. Methods. Information on the sequences of the lan-cluster of Streptomyces cyanogenus S136 and chromosomal DNAs of S. cyanogenus S136, Streptomyces laculatispora NRRL B-24909, and Streptomyces griseoluteus JCM 4765 and their annotations are presented in the GenBank database on the NSBI server. A computerized analysis of the nucleotide sequences of streptomycetes was done using the program BLASTN from the server NSBI. Results. The localization of the lan-cluster in the terminal region of the S. cyanogenus S136 genome has been shown. The nucleotide sequences similar to the lan-cluster sequence of S. cyanogenus S136 were found in the genomes of two strains (S. laculatispora NRRL B-24909 and S. griseoluteus JCM 4765). Streptomycetes (S. cyanogenus S136, S. laculatispora NRRL B-24909, and S. griseoluteus JCM 4765) are not genetically related strains. Conclusions. There are newly found probable lan-clusters in the genomes of two streptomycetes strains (S. laculatispora NRRL B-24909 and S. griseoluteus JCM 4765). Landomycin clusters of three strains are organized according to the same scheme. The clusters of lan-genes are present in the genomes of genetically unrelated streptomycetes.","PeriodicalId":18628,"journal":{"name":"Mikrobiolohichnyi zhurnal","volume":"49 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Sequences Similar to the lan-Cluster (Streptomyces cyanogenus S136) Were Found in the Genomes of Other Streptomycetes\",\"authors\":\"L. Polishchuk, V. Lukyanchuk\",\"doi\":\"10.15407/microbiolj85.03.012\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The aim of the work is to identify strains of streptomycetes in the genomes of which there are nucleotide sequences similar to the gene cluster determining the synthesis of landomycin A (lan-cluster) and establish the level of similarity of their primary structures and organizations. Methods. Information on the sequences of the lan-cluster of Streptomyces cyanogenus S136 and chromosomal DNAs of S. cyanogenus S136, Streptomyces laculatispora NRRL B-24909, and Streptomyces griseoluteus JCM 4765 and their annotations are presented in the GenBank database on the NSBI server. A computerized analysis of the nucleotide sequences of streptomycetes was done using the program BLASTN from the server NSBI. Results. The localization of the lan-cluster in the terminal region of the S. cyanogenus S136 genome has been shown. The nucleotide sequences similar to the lan-cluster sequence of S. cyanogenus S136 were found in the genomes of two strains (S. laculatispora NRRL B-24909 and S. griseoluteus JCM 4765). Streptomycetes (S. cyanogenus S136, S. laculatispora NRRL B-24909, and S. griseoluteus JCM 4765) are not genetically related strains. Conclusions. There are newly found probable lan-clusters in the genomes of two streptomycetes strains (S. laculatispora NRRL B-24909 and S. griseoluteus JCM 4765). Landomycin clusters of three strains are organized according to the same scheme. The clusters of lan-genes are present in the genomes of genetically unrelated streptomycetes.\",\"PeriodicalId\":18628,\"journal\":{\"name\":\"Mikrobiolohichnyi zhurnal\",\"volume\":\"49 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-06-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mikrobiolohichnyi zhurnal\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.15407/microbiolj85.03.012\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mikrobiolohichnyi zhurnal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.15407/microbiolj85.03.012","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0

摘要

这项工作的目的是鉴定在基因组中存在与决定陆霉素A合成的基因簇(lan-cluster)相似的核苷酸序列的链霉菌菌株,并确定其初级结构和组织的相似性水平。方法。蓝藻链霉菌(Streptomyces cyanogenus S136)的区域群序列、S. cyanogenus S136、laculatispora链霉菌(Streptomyces laculatispora NRRL B-24909)和灰链霉菌(Streptomyces griseoluteus JCM 4765)的染色体dna序列及其注释已在NSBI服务器的GenBank数据库中公布。利用服务器NSBI的BLASTN程序对链霉菌的核苷酸序列进行计算机化分析。结果。蓝藻S. cyanogenus S136基因组末端区域的lan-cluster定位已被证实。在两株菌株(S. laculatispora NRRL B-24909和S. griseoluteus JCM 4765)的基因组中发现了与S. cyanogenus S136相似的核苷酸序列。链霉菌(S. cyanogenus S136, S. laculatispora NRRL B-24909和S. griiseoluteus JCM 4765)不是遗传相关的菌株。结论。在两株链菌(S. laculatispora NRRL B-24909和S. griseoluteus JCM 4765)基因组中新发现了可能的兰簇。三个菌株的陆霉素簇按照相同的方案组织。lan基因簇存在于基因不相关的链菌的基因组中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Sequences Similar to the lan-Cluster (Streptomyces cyanogenus S136) Were Found in the Genomes of Other Streptomycetes
The aim of the work is to identify strains of streptomycetes in the genomes of which there are nucleotide sequences similar to the gene cluster determining the synthesis of landomycin A (lan-cluster) and establish the level of similarity of their primary structures and organizations. Methods. Information on the sequences of the lan-cluster of Streptomyces cyanogenus S136 and chromosomal DNAs of S. cyanogenus S136, Streptomyces laculatispora NRRL B-24909, and Streptomyces griseoluteus JCM 4765 and their annotations are presented in the GenBank database on the NSBI server. A computerized analysis of the nucleotide sequences of streptomycetes was done using the program BLASTN from the server NSBI. Results. The localization of the lan-cluster in the terminal region of the S. cyanogenus S136 genome has been shown. The nucleotide sequences similar to the lan-cluster sequence of S. cyanogenus S136 were found in the genomes of two strains (S. laculatispora NRRL B-24909 and S. griseoluteus JCM 4765). Streptomycetes (S. cyanogenus S136, S. laculatispora NRRL B-24909, and S. griseoluteus JCM 4765) are not genetically related strains. Conclusions. There are newly found probable lan-clusters in the genomes of two streptomycetes strains (S. laculatispora NRRL B-24909 and S. griseoluteus JCM 4765). Landomycin clusters of three strains are organized according to the same scheme. The clusters of lan-genes are present in the genomes of genetically unrelated streptomycetes.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Mikrobiolohichnyi zhurnal
Mikrobiolohichnyi zhurnal Medicine-Microbiology (medical)
CiteScore
0.70
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信