用蛋白谱分析和茎鞘描述符分析20个枝菖蒲属植物的系统发育接近性

S. Malik, S. Biswas, S. Nautiyal, Dhiraj Kumar
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引用次数: 1

摘要

由于其广泛的分布和适应性,其遗传结构具有很大的多样性,因此对其遗传资源的鉴定和鉴定具有重要意义。本研究通过茎鞘特征和蛋白质谱分析来评估狭叶曲霉种质资源的多样性。欧几里得方法对茎鞘描述符进行了连锁聚类。其中,子簇I由A1、A20组成,子簇II由A5、A10、A40、A38、A19、A8、A36、A7、A11、A88和A13组成。第二个聚类包括A16、A23、A17、a18、A28和A32,显示出相当程度的系统发育亲缘关系。A35是树状图中的一个离群值,它与其他元素明显疏远。采用UPGMA聚类分析方法对20个菌株进行蛋白谱分析,最终将其聚类为4个聚类,并进一步细分为亚聚类。从Jaccards相似性系数来看,聚类1的遗传相似性较高。聚类IV包含单一品种A36 (Hoshiarpur II),与其他品种存在遗传差异。遗传多样性在89%(0.89)~ 11%(0.11)之间,具有广泛的基础,值得进一步研究、鉴定和保护。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Phylogenetic Proximity among Twenty Accessions of Dendrocalamus strictus Unfolded by Protein Profiling and Culm Sheath Descriptors
The wide distribution and adaptability of D. strictus encompasses great diversity which is expected to be reflected in its genetic constitution, hence identification and characterization of its genetic resources assumes great significance. The present work was carried to assess diversity in D. strictus germplasm through Culm sheath characteristics and Protein profiling. Euclidean method linkage ward cluster was carried on culm sheath descriptors. Three clusters were obtained with first cluster further segregating into two sub clusters, with sub cluster I comprising A1, A20 whereas sub cluster II including A5, A10, A40, A38, A19, A8, A36, A7, A11, A88 and A13. The second cluster comprised of accession A16, A23, A17, 18, A28, A32, underlining a fair degree of phylogenetic relatedness. A35, an outlier in the dendrogram parted separately, featuring an apparent remoteness from rest of the accessions. Cluster analysis for protein profiling of the D. strictus genotypes employing UPGMA analysis led to segregation of twenty accessions and their ultimate grouping into four clusters which were further subdivided into subclusters. From Jaccards similarity coefficient, the accessions in cluster I showed high genetic similarity. Cluster IV contained singular accession A36 (Hoshiarpur II) which was found to be genetically divergent from the rest of the accessions. Genetic diversity ranged from 89% (0.89) to 11% (0.11) representing a broad base which warrants further documentation, characterization and conservation for D. strictus improvement.
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