基于DNA条形码技术的穿心莲分子特征及系统发育研究

Prashant Hande, B. Kumar, V. Jha, A. Bhosale, S. Gangurde
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引用次数: 0

摘要

随着各种分子诊断工具的进步,DNA条形码已经成为全球范围内的金标准分子诊断工具。自古以来,药用植物在印度阿育吠陀医学中被广泛用于治疗各种疾病。穿心莲属植物已被广泛用于治疗不同类型的疾病。本研究对一些很少被研究的药用植物进行了分离,在遗传水平上进行了测序,并利用系统发育分析对其进化特征进行了研究。本研究利用系统发育方法,针对不同的条形码基因,如核酮糖-二磷酸羧化酶、内部转录间隔酶、RNA聚合酶- β亚基、成熟酶K和光系统II蛋白D1基因,确定了echioides的身份。成功分离和扩增基因组DNA后,利用特定引物对每个条形码基因进行测序,然后进行核苷酸BLAST分析,确定每个基因与其他植物物种基因的序列百分比一致性。然后利用最佳同源物进行系统发育分析,证实该植物为穿心莲。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Andrographis Echioides Molecular Characterization and Phylogenetic Study Using DNA Barcoding Technique
With the advancement in various molecular diagnostic tools, DNA Barcoding has emerged as a gold standard molecular diagnostic tool across the globe. Since ancient times, medicinal plants have been widely used in Indian Ayurvedic medicine for treating a variety of ailments. Plants of the genus Andrographis have been extensively used for treating different types of ailments. In this study, rarely studied medicinal plant species were isolated, sequenced at the genetic level and studied for their evolutionary characteristics using phylogenetic analysis. In the present study, the identity of A. echioides was confirmed by targeting different barcoding genes such as ribulose-bisphosphate carboxylase, internal transcribed spacer, RNA polymerase-beta subunit, maturase K, and photosystem II protein D1 genes using a phylogenetic approach. After successful isolation and amplification of genomic DNA, specific primers were utilised for sequencing of each barcoding gene, followed by nucleotide BLAST analysis to determine the sequence percent identity of each gene with that from other plant species. The best homologs were then utilised for conducting phylogenetic analysis which confirmed the identity of the plant as Andrographis echioides.
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