连续阳性阈值组检测的非自适应算法

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
{"title":"连续阳性阈值组检测的非自适应算法","authors":"","doi":"10.1093/imaiai/iaad009","DOIUrl":null,"url":null,"abstract":"\n Given up to $d$ positive items in a large population of $n$ items ($d \\ll n$), the goal of threshold group testing is to efficiently identify the positives via tests, where a test on a subset of items is positive if the subset contains at least $u$ positive items, negative if it contains up to $\\ell $ positive items and arbitrary (either positive or negative) otherwise. The parameter $g = u - \\ell - 1$ is called the gap. In non-adaptive strategies, all tests are fixed in advance and can be represented as a measurement matrix, in which each row and column represent a test and an item, respectively. In this paper, we consider non-adaptive threshold group testing with consecutive positives in which the items are linearly ordered and the positives are consecutive in that order. We show that by designing deterministic and strongly explicit measurement matrices, $\\lceil \\log _{2}{\\lceil \\frac {n}{d} \\rceil } \\rceil + 2d + 3$ (respectively, $\\lceil \\log _{2}{\\lceil \\frac {n}{d} \\rceil } \\rceil + 3d$) tests suffice to identify the positives in $O \\left ( \\log _{2}{\\frac {n}{d}} + d \\right )$ time when $g = 0$ (respectively, $g> 0$). The results significantly improve the state-of-the-art scheme that needs $15 \\lceil \\log _{2}{\\lceil \\frac {n}{d} \\rceil } \\rceil + 4d + 71$ tests to identify the positives in $O \\left ( \\frac {n}{d} \\log _{2}{\\frac {n}{d}} + ud^{2} \\right )$ time, and whose associated measurement matrices are random and (non-strongly) explicit.","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2023-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Non-adaptive algorithms for threshold group testing with consecutive positives\",\"authors\":\"\",\"doi\":\"10.1093/imaiai/iaad009\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n Given up to $d$ positive items in a large population of $n$ items ($d \\\\ll n$), the goal of threshold group testing is to efficiently identify the positives via tests, where a test on a subset of items is positive if the subset contains at least $u$ positive items, negative if it contains up to $\\\\ell $ positive items and arbitrary (either positive or negative) otherwise. The parameter $g = u - \\\\ell - 1$ is called the gap. In non-adaptive strategies, all tests are fixed in advance and can be represented as a measurement matrix, in which each row and column represent a test and an item, respectively. In this paper, we consider non-adaptive threshold group testing with consecutive positives in which the items are linearly ordered and the positives are consecutive in that order. We show that by designing deterministic and strongly explicit measurement matrices, $\\\\lceil \\\\log _{2}{\\\\lceil \\\\frac {n}{d} \\\\rceil } \\\\rceil + 2d + 3$ (respectively, $\\\\lceil \\\\log _{2}{\\\\lceil \\\\frac {n}{d} \\\\rceil } \\\\rceil + 3d$) tests suffice to identify the positives in $O \\\\left ( \\\\log _{2}{\\\\frac {n}{d}} + d \\\\right )$ time when $g = 0$ (respectively, $g> 0$). The results significantly improve the state-of-the-art scheme that needs $15 \\\\lceil \\\\log _{2}{\\\\lceil \\\\frac {n}{d} \\\\rceil } \\\\rceil + 4d + 71$ tests to identify the positives in $O \\\\left ( \\\\frac {n}{d} \\\\log _{2}{\\\\frac {n}{d}} + ud^{2} \\\\right )$ time, and whose associated measurement matrices are random and (non-strongly) explicit.\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2023-04-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://doi.org/10.1093/imaiai/iaad009\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1093/imaiai/iaad009","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 1

摘要

在大量的$n$项($d \ll n$)中给出$d$阳性项目,阈值组测试的目标是通过测试有效地识别阳性项目,其中,如果对项目子集的测试至少包含$u$个阳性项目,则为阳性,如果包含多达$\ell $个阳性项目,则为阴性,否则为任意(阳性或阴性)。参数$g = u - \ell - 1$称为间隙。在非自适应策略中,所有的测试都是预先固定的,可以用测量矩阵表示,其中每一行和每一列分别代表一个测试和一个项目。在本文中,我们考虑具有连续阳性的非自适应阈值群检验,其中项目是线性有序的,阳性是连续的。我们表明,通过设计确定性和强显式测量矩阵,$\lceil \log _{2}{\lceil \frac {n}{d} \rceil } \rceil + 2d + 3$(分别,$\lceil \log _{2}{\lceil \frac {n}{d} \rceil } \rceil + 3d$)测试足以识别$g = 0$(分别,$g> 0$)时$O \left ( \log _{2}{\frac {n}{d}} + d \right )$时间的阳性。结果显著改进了最先进的方案,该方案需要$15 \lceil \log _{2}{\lceil \frac {n}{d} \rceil } \rceil + 4d + 71$测试来识别$O \left ( \frac {n}{d} \log _{2}{\frac {n}{d}} + ud^{2} \right )$时间内的阳性,并且其相关的测量矩阵是随机和(非强)显式的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Non-adaptive algorithms for threshold group testing with consecutive positives
Given up to $d$ positive items in a large population of $n$ items ($d \ll n$), the goal of threshold group testing is to efficiently identify the positives via tests, where a test on a subset of items is positive if the subset contains at least $u$ positive items, negative if it contains up to $\ell $ positive items and arbitrary (either positive or negative) otherwise. The parameter $g = u - \ell - 1$ is called the gap. In non-adaptive strategies, all tests are fixed in advance and can be represented as a measurement matrix, in which each row and column represent a test and an item, respectively. In this paper, we consider non-adaptive threshold group testing with consecutive positives in which the items are linearly ordered and the positives are consecutive in that order. We show that by designing deterministic and strongly explicit measurement matrices, $\lceil \log _{2}{\lceil \frac {n}{d} \rceil } \rceil + 2d + 3$ (respectively, $\lceil \log _{2}{\lceil \frac {n}{d} \rceil } \rceil + 3d$) tests suffice to identify the positives in $O \left ( \log _{2}{\frac {n}{d}} + d \right )$ time when $g = 0$ (respectively, $g> 0$). The results significantly improve the state-of-the-art scheme that needs $15 \lceil \log _{2}{\lceil \frac {n}{d} \rceil } \rceil + 4d + 71$ tests to identify the positives in $O \left ( \frac {n}{d} \log _{2}{\frac {n}{d}} + ud^{2} \right )$ time, and whose associated measurement matrices are random and (non-strongly) explicit.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信